Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E17
         (924 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    25   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 538 LRLQQARAFVRPSASRKPFHV 476
           +RL  ARAF+ P  +R   HV
Sbjct: 261 VRLSSARAFITPFENRSNLHV 281


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 326 PSNKREIIFKSKIHSPIATPMCF*AFLSDVNTPYGKFSIGKSESDE 189
           PSN+  I   +       T +CF + L D  T  G++ +   E  E
Sbjct: 372 PSNEETIDINNGAELMQETHVCFFSLLRDAFTSKGEYRMSTGEMKE 417



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 315  FIRWPATKKQAKCIQGREIKRVYGTDQTSL 404
            FI+   +  Q++ IQ +++KRV    Q S+
Sbjct: 1048 FIKQSPSSNQSQQIQQQQLKRVVTNQQQSI 1077


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,502
Number of Sequences: 438
Number of extensions: 5811
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30113811
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)