Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E17
         (924 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t...   193   1e-49
At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C...    31   0.82 
At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small GTP...    28   7.6  

>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
           fumarylacetoacetase (Fumarylacetoacetate hydrolase,
           Beta-diketonase, FAA)[Rattus norvegicus]
           SWISS-PROT:P25093
          Length = 421

 Score =  193 bits (471), Expect = 1e-49
 Identities = 94/182 (51%), Positives = 127/182 (69%), Gaps = 2/182 (1%)
 Frame = +1

Query: 169 MKSFIEYSSDSDFPIENLPYGVFTSDKNAQKHIGVAIGEWILDLNIISR--LFDGPLLKS 342
           +KSFI+  SDS FPI+NLPYGVF  + N+     VAIG+ +LDL+ IS   LFDG +LK 
Sbjct: 4   LKSFIDVGSDSHFPIQNLPYGVFKPESNSTPRPAVAIGDLVLDLSAISEAGLFDGLILKD 63

Query: 343 KQNVFKEEKLNAFMALTKPHWIEARETLQKLLDVSSPALQNNAELREKAFVKQTDVQMHV 522
             + F +  LN F+A+ +P W EAR TLQ++L  + P L++N  LR K+F + + V+M V
Sbjct: 64  A-DCFLQPNLNKFLAMGRPAWKEARSTLQRILSSNEPILRDNDVLRRKSFHQMSKVEMIV 122

Query: 523 PVEVGDYTDFYSSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPIHXPY 702
           P+ +GDYTDF++S+ HA N G+MFRG E A+  NW  LP+ YHGR+SSIVISGT I  P 
Sbjct: 123 PMVIGDYTDFFASMHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISGTDIIRPR 182

Query: 703 GK 708
           G+
Sbjct: 183 GQ 184



 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +3

Query: 738 PHFGPXRLMDFDLEVGAFVGXPPHTGGK 821
           P+FGP + +DF+LE+ A VG P +  GK
Sbjct: 193 PYFGPSKKLDFELEMAAVVG-PGNELGK 219


>At1g07160.1 68414.m00762 protein phosphatase 2C, putative / PP2C,
           putative similar to protein phosphatase 2C GI:2582800
           from [Medicago sativa]
          Length = 380

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
 Frame = -2

Query: 506 SVCFTKAFSRSSALFCNAGLETSSNFCKVSLA-SIQ*GLVSAINAFNFSSLNTFCLLF-- 336
           +VC +  FS SS+LFCN  L TS     ++L+ S     VS+ +    S  + FCL    
Sbjct: 6   AVCNSPVFSPSSSLFCNKPLNTSPAHETLTLSLSHLNPPVSSTSPSAASPTSPFCLRLLK 65

Query: 335 ---------SSGPSNKREIIFKSKIHSPIATPMCF*AFLSDVNTPYGKFSIGKSESDEYS 183
                     SGP +  +    + +  P+A P+   A +S+ +TP  +    + E D YS
Sbjct: 66  PPAKLGFGSDSGPGSILKRKRPTTLDIPVA-PVGIAAPISNADTPREESRAVEREGDGYS 124

Query: 182 M 180
           +
Sbjct: 125 V 125


>At1g02130.1 68414.m00139 Ras-related protein (ARA-5) / small
           GTP-binding protein, putative identical to Ras-related
           protein ARA-5 SP:P28188 from [Arabidopsis thaliana]
          Length = 203

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 556 SSLQHATNVGIMFRGKEAALFENWKHLPVGYHGRSSSIVISGTPI 690
           +S + ATNV   F    A++ E     P G + R  ++ I G P+
Sbjct: 150 TSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQPV 194


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,864,089
Number of Sequences: 28952
Number of extensions: 433855
Number of successful extensions: 1083
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)