Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E16
         (996 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.9  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 58  LCCSPVRISSALSLSTVHHGRQVRSSLRLH 147
           L CS  R    LS+S +  GR +  S R+H
Sbjct: 630 LTCSVTRGDLPLSISWLKDGRAMGPSERVH 659


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 172 HHRSLGQSDAGEENYELGGHDVL 104
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = +2

Query: 548 VSSNVXETNEKLAPQDQGPAYDDFAXXTPQXXDQG 652
           +  N    N +      GP+YD  A  +P+    G
Sbjct: 535 IQYNTRAENHQTGTAKMGPSYDPMAVVSPRLKVHG 569


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.9
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
 Frame = +3

Query: 852 PGXQPTSXHK-SPPXRSXXPPPXXP 923
           P   P +  + SPP  S  PPP  P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,045
Number of Sequences: 438
Number of extensions: 4385
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33016347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)