Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E14
         (916 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein famil...    31   7.7  
AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein famil...    31   7.7  
AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.         31   7.7  

>BC003413-1|AAH03413.1|  217|Homo sapiens nucleolar protein family
           A, member 1 (H/ACA small nucleolar RNPs) protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 723 GXPXGGFFXXKGGXXGXKXXEXNFFXXGGGGGGXXIFVXG 842
           G   GGF    GG    +    N F  GGGGGG   F  G
Sbjct: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGG 44


>AY780787-1|AAV98357.1|  199|Homo sapiens nucleolar protein family A
           member 1 protein.
          Length = 199

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 723 GXPXGGFFXXKGGXXGXKXXEXNFFXXGGGGGGXXIFVXG 842
           G   GGF    GG    +    N F  GGGGGG   F  G
Sbjct: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGDNFRGG 44


>AJ276003-1|CAB76563.1|  217|Homo sapiens GAR1 protein protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 723 GXPXGGFFXXKGGXXGXKXXEXNFFXXGGGGGGXXIFVXG 842
           G   GGF    GG    +    N F  GGGGGG   F  G
Sbjct: 5   GGGRGGFNRGGGGGGFNRGGSSNHFRGGGGGGGGGNFRGG 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,583,956
Number of Sequences: 237096
Number of extensions: 1083364
Number of successful extensions: 4021
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3665
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)