Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_E12
(940 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 32 0.57
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.1
07_01_0080 + 587674-588510 29 5.3
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 28 9.3
05_01_0545 - 4756266-4757510 28 9.3
03_01_0515 - 3864796-3865425 28 9.3
01_02_0021 + 10281611-10281997 28 9.3
>09_06_0147 +
21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 32.3 bits (70), Expect = 0.57
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 343 AWPSRRSPEEDWALTSSTSN*RAIEDPASSLXSKYT 450
A+P ++ P ED +STSN R +D S+ SK+T
Sbjct: 772 AFPQKQPPAEDLRFAASTSNRRYFDDQDSTKKSKHT 807
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +3
Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPP 740
PPP P G P K P P PPP
Sbjct: 344 PPPPPPAKGPPPPPPPKGPSPPPPPP 369
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 666 PPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPP 806
PP P G P K P P PP P PPP
Sbjct: 336 PPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPP 382
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 3.1
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
PPP P P P P PPP P+ PPP P
Sbjct: 547 PPPPPPPPSGNKPAF-SPPPPPPPPPPPPLPQSNYASSQPPPPPPPPPLP 595
>07_01_0080 + 587674-588510
Length = 278
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 662 PPPPXPXXGGXXPPXXKXXXXXXPPP 739
PPPP P G PP PPP
Sbjct: 93 PPPPPPPSSGSPPPPPPPPPPPPPPP 118
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 662 PPPPXPXXGGXXPPXXKXXXXXXPPP 739
PPPP P G PP PPP
Sbjct: 94 PPPPPPSSGSPPPPPPPPPPPPPPPP 119
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +3
Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
PPP P P P PPP P PPP P
Sbjct: 231 PPPPPPPKPANIAGAPGLPLPPPPPPPPGPPPREIVPGQTLLPPPPPPRP 280
>05_01_0545 - 4756266-4757510
Length = 414
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +2
Query: 662 PPPPXPXXGGXXPPXXKXXXXXXPPP 739
PPPP P G PP PPP
Sbjct: 385 PPPPPPAYPGPLPPVYPVPYASPPPP 410
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/50 (28%), Positives = 14/50 (28%)
Frame = +3
Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
PPP P P P P PP P PPP P
Sbjct: 71 PPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPPPSPPPPSPVKSSPPPPP 120
>01_02_0021 + 10281611-10281997
Length = 128
Score = 28.3 bits (60), Expect = 9.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 266 GAGGILRIPSAGAEDQGHRYKGPREWLGRAVDHPRRIG 379
G+GG + + G + G GPRE L DHP R G
Sbjct: 53 GSGGSVAV---GPHEHGSSAAGPREALPCCRDHPHRCG 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,824,621
Number of Sequences: 37544
Number of extensions: 405084
Number of successful extensions: 1794
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -