Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E12
         (940 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    30   2.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    30   2.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    30   2.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   6.3  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
           PPP  P  G   P     P P  PPP    P              PPP P
Sbjct: 742 PPPPPPPGG--LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 666 PPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
           PP  P  G   P     P P  PP     P              PPP P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
           PPP  P  G   P     P P  PPP    P              PPP P
Sbjct: 742 PPPPPPPGG--LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 666 PPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
           PP  P  G   P     P P  PP     P              PPP P
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 790


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 663 PPPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
           PPP  P  G   P     P P  PPP    P              PPP P
Sbjct: 325 PPPPPPPGG--LPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +3

Query: 666 PPXXPXXGXXXPXXXKXPXPXXPPPXXXXPKXXXXXXXXXXXXXPPPXP 812
           PP  P  G   P     P P  PP     P              PPP P
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPP 373


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 665 PPPXPXXGGXXPPXXKXXXXXXPPP 739
           PPP P  GG  PP         PPP
Sbjct: 95  PPPPPMMGGIPPPPPMFGAPPPPPP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,628,725
Number of Sequences: 27780
Number of extensions: 291637
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)