Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E11
         (977 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.60 
U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    25   1.4  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    25   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.60
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 617 SXGXGGXGXSPXXTXPAPPPGERAXXXFGPPXRXPPPPXP 736
           S G  G   SP  +  AP  G       GPP   PP   P
Sbjct: 17  SSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.79
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = +2

Query: 812 PXPGGXPXQKPFSPXXPRXPPXNRXXGRLXPXXPPPXXPPXXXP 943
           P P   P Q P +P   R  P N   G   P   PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAP--QRGSPPNPSQG--PPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +1

Query: 868 PTPXPXPXAAXXXXPPPXXPPXXPXXSPXXPP 963
           P+P   P A     PP       P   P  PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 776 PSXPQGGXXXFPPXPGGXPXQKPFSP 853
           P+ PQ G   FP  PG    Q PF+P
Sbjct: 24  PNVPQPGRRPFPTFPG----QGPFNP 45


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 776 PSXPQGGXXXFPPXPGGXPXQKPFSP 853
           P+ PQ G   FP  PG    Q PF+P
Sbjct: 10  PNVPQPGRRPFPTFPG----QGPFNP 31


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 704 PPXRXPPPPXP 736
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,325
Number of Sequences: 438
Number of extensions: 5711
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)