Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E09
         (958 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   3.7  
AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family ...    28   8.6  

>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 157 PSGAPPSGG--PPGLFDPSGAP-PSGGPPGPFGPSGAPPSGGPPG 198



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 232 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPG 273



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 262 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFDPSGAPPSGGPPG 303



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 322 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPG 363



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 352 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFDPSGAPPSGGPPG 393



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 367 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFDPSGAPPSGGPPG 408



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 382 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPG 423



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 397 PSGAPPSGG--PPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPG 438



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 412 PSGAPPSGG--PPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPG 453



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 427 PSGAPPSGG--PPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPG 468



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 442 PSGAPPSGG--PPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPG 483



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = +3

Query: 756 PXSTPPKNXFTPPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPG 890
           P   PP     PP    P   P P GG  G F     PP   PPG
Sbjct: 472 PSGAPPSGG--PPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPG 513



 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +3

Query: 789 PPXXXFPFXXPXPXGGXGGXFFSXXXPPXXXPPGXXG 899
           PP    P   P P GG  G F     PP   PPG  G
Sbjct: 151 PPGPFDPSGAP-PSGGPPGLFDPSGAPPSGGPPGPFG 186


>AF098986-1|AAC67425.1|  747|Caenorhabditis elegans T box family
           protein 31 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 386 YILKLTSRLNNTSIYGSRFKDHFPIALAEPRTSIAGPALTMP 261
           ++L L+  L   S Y    K HFP       TS+ GPA+ +P
Sbjct: 612 HLLNLSHHLCRFSEYNLFVKAHFPRGSYGSLTSMTGPAVEIP 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,221,339
Number of Sequences: 27780
Number of extensions: 281524
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2486134266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)