Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E07
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314...    33   0.23 
07_01_0714 - 5451246-5451408,5453401-5453534,5453608-5453796,545...    31   1.2  
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689...    30   2.8  
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    29   4.9  
07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392     29   6.5  

>02_01_0432 -
           3144560-3144655,3144792-3144832,3145019-3145094,
           3145465-3145542,3146121-3146208,3146613-3146686,
           3147445-3147579,3147699-3147770,3148239-3148325,
           3148418-3148522,3149028-3149085,3149576-3149634,
           3149960-3150056,3150217-3150317,3150443-3150487,
           3150619-3150681,3151082-3151147,3151286-3151342,
           3151570-3151656,3152063-3152239,3152413-3152625
          Length = 624

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
 Frame = +2

Query: 464 LSRESLDNHDVEAERAXEXRKN--KLHLITEKVESCMNLLDVP---------DRTLLH-E 607
           + ++ LDN D+E ER    +    ++  I      C+NL+D P          R+L   E
Sbjct: 109 MKQQFLDNMDLERERGITIKLQAARMRYIMNDEPYCLNLIDTPGHVDFSYEVSRSLAACE 168

Query: 608 GDLLEIDAEENTAXQRMLXIYL 673
           G LL +DA +    Q +  +YL
Sbjct: 169 GALLVVDASQGVEAQTLANVYL 190


>07_01_0714 -
           5451246-5451408,5453401-5453534,5453608-5453796,
           5454313-5454825,5455815-5456856,5457283-5457380,
           5458224-5458451
          Length = 788

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 274 NLAEETASALKKNVYENYMXFIETATEISHL 366
           +L + +A  ++++VY NY  FI T+ EIS L
Sbjct: 87  DLKKASAEEMRRSVYANYAAFIRTSKEISDL 117


>03_06_0358 +
           33366265-33366447,33367371-33367468,33367910-33368945,
           33369042-33369554,33370456-33370644,33370715-33370848,
           33371196-33371358
          Length = 771

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 274 NLAEETASALKKNVYENYMXFIETATEISHL 366
           +L + ++  ++++VY NY  FI T+ EIS L
Sbjct: 72  DLKKASSEEMRRSVYANYAAFIRTSKEISDL 102


>10_08_0829 -
           20871810-20872011,20873226-20873359,20873480-20877313,
           20878057-20878177,20878414-20878451,20879096-20879218,
           20879308-20879505,20880270-20880356
          Length = 1578

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +2

Query: 377 MYKLSHLLSEQRSVLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEKV 556
           + +L   +  QR+ ++ LSH S L +        L   DVE  R    +++++ ++ EK+
Sbjct: 449 LQELEETIEVQRAEISNLSHTSDLIDHEVSPNNLLIQEDVEWARKVSLKEDEILMLREKI 508

Query: 557 ESCMNL 574
           +  +++
Sbjct: 509 DRMLHV 514


>07_03_0957 + 22877348-22877446,22877903-22877971,22878619-22879392
          Length = 313

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 285 RNRKCPKEKCLRELYAVYRDCDGDIPPRKQKCT-SYRIC*ANSVLC*LCSPTPQSSVTRT 461
           R + C KE CL+  +     C G   PRK + T  +      S     CS +  SS + +
Sbjct: 140 RCKDCTKEHCLKHRFGPDHKCPG---PRKPESTFPFGNMLRRSQKAESCSNSNSSSTSSS 196

Query: 462 VYHASLLIITTS 497
            + +SLL   TS
Sbjct: 197 WWSSSLLTAATS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,092,736
Number of Sequences: 37544
Number of extensions: 193274
Number of successful extensions: 374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)