Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E07
         (881 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30753| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)                   29   6.6  

>SB_30753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 286 ETASALKKNVYENYMXFIETATEIS 360
           E ++   K VYE Y+ F ETAT+IS
Sbjct: 212 EKSTETSKKVYEAYLYFPETATKIS 236


>SB_58506| Best HMM Match : Vps52 (HMM E-Value=0.099)
          Length = 775

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 470 RESLDNHDVEAERAXEXRKNKLHLITEKVESCMNLLDVPDRTL--LHEGDL 616
           RE ++  + + +R  E        + ++VE  +N LD+P+R +  L EGDL
Sbjct: 45  REHMEQME-DKDRHMETESTNRQKLLKQVEFLVNTLDIPERHIIALQEGDL 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,262,612
Number of Sequences: 59808
Number of extensions: 229820
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)