Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_E07
(881 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC035763-1|AAH35763.2| 725|Homo sapiens exocyst complex compone... 56 2e-07
AL117352-4|CAI23095.1| 721|Homo sapiens exocyst complex compone... 56 2e-07
BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein. 32 2.4
AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein. 32 2.4
AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein. 32 2.4
AF029343-1|AAB84144.1| 889|Homo sapiens protocadherin 68 protein. 30 9.7
>BC035763-1|AAH35763.2| 725|Homo sapiens exocyst complex component
8 protein.
Length = 725
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/60 (48%), Positives = 36/60 (60%)
Frame = +1
Query: 205 YVKDLARSCVGGXXLXQXXXXXXNLAEETASALKKNVYENYMXFIETATEISHLXNRNVQ 384
YVK L++ G L + LAEETA LK+NVY+NY FIETA EIS+L + Q
Sbjct: 27 YVKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQ 86
Score = 45.2 bits (102), Expect = 3e-04
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 26/122 (21%)
Frame = +2
Query: 371 TEMYKLSHLLSEQRSVL-----TVLSHASILG------NENGLSRESLDNH--------- 490
+EMY+LSHLL+EQ+S L T+L A+ G E G+ +H
Sbjct: 82 SEMYQLSHLLTEQKSSLESIPLTLLPAAAAAGAAAASGGEEGVGGAGGRDHLRGQAGFFS 141
Query: 491 -DVEAER-----AXEXRKNKLHLITEKVESCMNLLDVPDRTLLHEGDLLEIDAEENTAXQ 652
A R E ++ L + EKVE C +LL+ P + L++ GDL+E DA+ Q
Sbjct: 142 TPGGASRDGSGPGEEGKQRTLTTLLEKVEGCRHLLETPGQYLVYNGDLVEYDADHMAQLQ 201
Query: 653 RM 658
R+
Sbjct: 202 RV 203
>AL117352-4|CAI23095.1| 721|Homo sapiens exocyst complex component
8 protein.
Length = 721
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/60 (48%), Positives = 36/60 (60%)
Frame = +1
Query: 205 YVKDLARSCVGGXXLXQXXXXXXNLAEETASALKKNVYENYMXFIETATEISHLXNRNVQ 384
YVK L++ G L + LAEETA LK+NVY+NY FIETA EIS+L + Q
Sbjct: 23 YVKQLSQQSDGDRDLQEHRQRIQALAEETAQNLKRNVYQNYRQFIETAREISYLESEMYQ 82
Score = 45.2 bits (102), Expect = 3e-04
Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 26/122 (21%)
Frame = +2
Query: 371 TEMYKLSHLLSEQRSVL-----TVLSHASILG------NENGLSRESLDNH--------- 490
+EMY+LSHLL+EQ+S L T+L A+ G E G+ +H
Sbjct: 78 SEMYQLSHLLTEQKSSLESIPLTLLPAAAAAGAAAASGGEEGVGGAGGRDHLRGQAGFFS 137
Query: 491 -DVEAER-----AXEXRKNKLHLITEKVESCMNLLDVPDRTLLHEGDLLEIDAEENTAXQ 652
A R E ++ L + EKVE C +LL+ P + L++ GDL+E DA+ Q
Sbjct: 138 TPGGASRDGSGPGEEGKQRTLTTLLEKVEGCRHLLETPGQYLVYNGDLVEYDADHMAQLQ 197
Query: 653 RM 658
R+
Sbjct: 198 RV 199
>BC028165-1|AAH28165.1| 1159|Homo sapiens protocadherin 17 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 416 VLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEKVESCMNLLDVPDRT 595
+L V + + +L + + RESL H+ + + + E N + KVE + D+ D
Sbjct: 74 LLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVE----IQDINDNA 129
Query: 596 LLHEGDLLEIDAEENTA 646
D +E+D EN A
Sbjct: 130 PSFSSDQIEMDISENAA 146
>AL445288-1|CAI17092.1| 1159|Homo sapiens protocadherin 17 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 416 VLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEKVESCMNLLDVPDRT 595
+L V + + +L + + RESL H+ + + + E N + KVE + D+ D
Sbjct: 74 LLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVE----IQDINDNA 129
Query: 596 LLHEGDLLEIDAEENTA 646
D +E+D EN A
Sbjct: 130 PSFSSDQIEMDISENAA 146
>AL445216-1|CAH71250.1| 1159|Homo sapiens protocadherin 17 protein.
Length = 1159
Score = 32.3 bits (70), Expect = 2.4
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 416 VLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEKVESCMNLLDVPDRT 595
+L V + + +L + + RESL H+ + + + E N + KVE + D+ D
Sbjct: 74 LLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVE----IQDINDNA 129
Query: 596 LLHEGDLLEIDAEENTA 646
D +E+D EN A
Sbjct: 130 PSFSSDQIEMDISENAA 146
>AF029343-1|AAB84144.1| 889|Homo sapiens protocadherin 68 protein.
Length = 889
Score = 30.3 bits (65), Expect = 9.7
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +2
Query: 416 VLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEKVESCMNLLDVPDRT 595
+L V + + +L + + RESL H+ + + + E N + KVE + D+ D
Sbjct: 74 LLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKVE----IQDINDNA 129
Query: 596 LLHEGDLLEIDAEENTA 646
D + +D EN A
Sbjct: 130 PSFSSDQIXLDISENAA 146
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,040,175
Number of Sequences: 237096
Number of extensions: 995815
Number of successful extensions: 1867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1867
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -