Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E07
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical ...    34   0.15 
AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical ...    34   0.15 

>AL132877-8|CAD91705.1|  339|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2b protein.
          Length = 339

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 193 SPXRYVKDLARSCVGGXX---LXQXXXXXXNLAEETASALKKNVYENYMXFIETATEISH 363
           SP  Y++D  +    G     L         L   +   LK NV+ NY  FI+ + EISH
Sbjct: 15  SPSDYIRDRLKGVKIGDETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISH 74

Query: 364 L 366
           L
Sbjct: 75  L 75



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = +2

Query: 374 EMYKLSHLLSEQRSVLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEK 553
           E+Y+L+H L EQ+ V+  L   +      G  + S+  H V +        N + ++ +K
Sbjct: 78  EIYQLTHSLIEQKQVIENLIMMT------GDDKSSI--HTVSSHSTTTSTTNPIQILMQK 129

Query: 554 VE---SCMNLLDVPDRTLLHEGDLLEIDAEENTAXQRMLXIYLMXXL 685
           +E     +N +   ++ +L+ G++ + D E     Q+ + I L   L
Sbjct: 130 MEGIGGILNNMSTSEKVILY-GEMEQFDVETKKPVQKCMLILLSHRL 175


>AL132877-7|CAC70108.1|  686|Caenorhabditis elegans Hypothetical
           protein Y105E8B.2a protein.
          Length = 686

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
 Frame = +1

Query: 193 SPXRYVKDLARSCVGGXX---LXQXXXXXXNLAEETASALKKNVYENYMXFIETATEISH 363
           SP  Y++D  +    G     L         L   +   LK NV+ NY  FI+ + EISH
Sbjct: 15  SPSDYIRDRLKGVKIGDETRKLRHLRSEMGALNHASQETLKNNVFRNYQQFIDASKEISH 74

Query: 364 L 366
           L
Sbjct: 75  L 75



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 25/107 (23%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
 Frame = +2

Query: 374 EMYKLSHLLSEQRSVLTVLSHASILGNENGLSRESLDNHDVEAERAXEXRKNKLHLITEK 553
           E+Y+L+H L EQ+ V+  L   +      G  + S+  H V +        N + ++ +K
Sbjct: 78  EIYQLTHSLIEQKQVIENLIMMT------GDDKSSI--HTVSSHSTTTSTTNPIQILMQK 129

Query: 554 VE---SCMNLLDVPDRTLLHEGDLLEIDAEENTAXQRMLXIYLMXXL 685
           +E     +N +   ++ +L+ G++ + D E     Q+ + I L   L
Sbjct: 130 MEGIGGILNNMSTSEKVILY-GEMEQFDVETKKPVQKCMLILLSHRL 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,993,545
Number of Sequences: 27780
Number of extensions: 171928
Number of successful extensions: 334
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)