Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_E05
(948 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 258 6e-70
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 180 2e-46
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 117 3e-27
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 113 3e-26
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 109 6e-25
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 102 8e-23
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 99 8e-22
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 97 2e-21
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 92 1e-19
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 81 2e-16
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 71 2e-13
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 70 6e-13
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 69 1e-12
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 38 0.002
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 33 0.044
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 5.1
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 6.7
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 8.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 8.9
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 26 8.9
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 8.9
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 258 bits (633), Expect = 6e-70
Identities = 115/165 (69%), Positives = 135/165 (81%)
Frame = +3
Query: 156 MSEPQSSLLLKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLN 335
M S LL+KQL E+ KNP +GFS GL+DD I++WEV+IIGP DTLYEGGFF A L+
Sbjct: 1 MPSSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLS 60
Query: 336 FPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETI 515
FP++YPL PP+MKF TEIWHPN+ NG+VCISILH PGDDK+GYE A ERWLPVH+ ETI
Sbjct: 61 FPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETI 120
Query: 516 LISVISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 650
LISVISML+ PNDESPAN+DAAKE+RE EFKK+V R VR+S E
Sbjct: 121 LISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 180 bits (439), Expect = 2e-46
Identities = 84/163 (51%), Positives = 111/163 (68%)
Frame = +3
Query: 156 MSEPQSSLLLKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLN 335
MS+ + L K+ EL +N +G +AG +++D + W+ LI GP T +EGG + A L
Sbjct: 1 MSKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLK 60
Query: 336 FPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETI 515
FP +YPL PP +KF E +HPN+ K+G VCISILH PGDD YE +SERW PV +VE I
Sbjct: 61 FPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKI 120
Query: 516 LISVISMLADPNDESPANVDAAKEWRERYSEFKKKVARCVRKS 644
L+SV+SMLA+PNDES AN+DA K WRE E+ + V R RK+
Sbjct: 121 LLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 117 bits (281), Expect = 3e-27
Identities = 60/156 (38%), Positives = 90/156 (57%)
Frame = +3
Query: 183 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 362
L + + ++P G SA + DN + W +IIGP DT +E G FK L+F ++YP +P
Sbjct: 9 LMRDFKRMQQDPPAGVSASPVSDN-VMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKP 67
Query: 363 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 542
P +KFV+ ++HPN+ NG++C+ IL RW P + V IL S+ S+L
Sbjct: 68 PLVKFVSTMFHPNVYANGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLN 114
Query: 543 DPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 650
DPN+ SPAN +AA+ RE E+ ++V + V S E
Sbjct: 115 DPNNASPANAEAAQLHRENKKEYVRRVRKTVEDSWE 150
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 113 bits (273), Expect = 3e-26
Identities = 52/153 (33%), Positives = 86/153 (56%)
Frame = +3
Query: 183 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 362
+ ++LA+L K+P SAG + D D++ W+ I+GP D+ Y GG F ++FP +YP +P
Sbjct: 6 INRELADLGKDPPSSCSAGPVGD-DLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKP 64
Query: 363 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 542
P++ F T I+HPNI+ NG +C+ IL ++W P T+ +L+S+ S+L
Sbjct: 65 PKVNFTTRIYHPNINSNGSICLDILR-------------DQWSPALTISKVLLSICSLLT 111
Query: 543 DPNDESPANVDAAKEWRERYSEFKKKVARCVRK 641
DPN + P + A ++ S ++ RK
Sbjct: 112 DPNPDDPLVPEIAHVYKTDRSRYELSAREWTRK 144
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 109 bits (262), Expect = 6e-25
Identities = 54/156 (34%), Positives = 87/156 (55%)
Frame = +3
Query: 183 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 362
L+ +L L + G SA D+++ W I GP DT YEG FK ++FP YP P
Sbjct: 33 LRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSP 92
Query: 363 PRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLA 542
P + F + +WHPN+D +G++C+ IL ++W V+ V+TIL+S+ S+L
Sbjct: 93 PTIIFTSPMWHPNVDMSGNICLDIL-------------KDKWSAVYNVQTILLSLQSLLG 139
Query: 543 DPNDESPANVDAAKEWRERYSEFKKKVARCVRKSQE 650
+PN+ SP N AA+ W + E+K+ + + ++ E
Sbjct: 140 EPNNASPLNAQAAELWSKDPIEYKRLLMQRYKEIDE 175
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 102 bits (244), Expect = 8e-23
Identities = 50/157 (31%), Positives = 86/157 (54%)
Frame = +3
Query: 159 SEPQSSLLLKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNF 338
+ P SS L K+ ++L ++P+ L+DDN ++ W +GP D++Y GG F L F
Sbjct: 4 ASPSSSRRLTKEYSDLREHPIPDIRVNLVDDN-LFHWACTALGPSDSVYAGGKFHFSLKF 62
Query: 339 PKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETIL 518
P +YP +PP ++F T I+HPN D G+VC++IL + + + P + ++L
Sbjct: 63 PLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQ------------QVFKPSIKLRSVL 110
Query: 519 ISVISMLADPNDESPANVDAAKEWRERYSEFKKKVAR 629
++ +L +PN + P A+++R F K+AR
Sbjct: 111 EQILQLLREPNPDDPLVASIAEQYRNDRPSF-DKIAR 146
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 99.1 bits (236), Expect = 8e-22
Identities = 48/130 (36%), Positives = 76/130 (58%)
Frame = +3
Query: 255 DIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISI 434
D+ W+V I G P T +EGG +K + FP+EYP RPP+ +F ++HPN+ +G VC+SI
Sbjct: 37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96
Query: 435 LHEPGDDKWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRERYSEFK 614
L+E E W P T++ IL+ + +L DPN SPA +A +++ E++
Sbjct: 97 LNE-----------EEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYE 145
Query: 615 KKVARCVRKS 644
K+V R++
Sbjct: 146 KRVRAQAREN 155
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/136 (34%), Positives = 77/136 (56%)
Frame = +3
Query: 189 KQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPR 368
K++ L ++P G A +DN Y +++ + GP + YEGG F L P EYP+ PP
Sbjct: 9 KEIETLTRDPPPGIVAAPTEDNLRY-FKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPN 67
Query: 369 MKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISMLADP 548
++F+T+I+HPN+DK G +C+S L + W P + T+L+S+ +++ P
Sbjct: 68 VRFLTKIYHPNVDKLGRICLSTL-------------KKDWSPALQIRTVLLSIQALMGAP 114
Query: 549 NDESPANVDAAKEWRE 596
N + P + D AK W+E
Sbjct: 115 NPDDPLDNDVAKIWKE 130
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 91.9 bits (218), Expect = 1e-19
Identities = 47/144 (32%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
Frame = +3
Query: 183 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRP 362
+ K+LA++ ++ G I+D DI + + GP T YEGG+F + P +YP RP
Sbjct: 9 IAKELADVQQDKQAGIQVWTIND-DISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRP 67
Query: 363 PRMKFVTEIWHPNI-DKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISML 539
P+M F T+I+HPN+ + G +C+ IL ++W PV+T+++ LIS+ S+L
Sbjct: 68 PKMNFDTKIYHPNVSSQTGAICLDIL-------------KDQWSPVYTMKSALISLQSLL 114
Query: 540 ADPNDESPANVDAAKEWRERYSEF 611
P +P + A+ + + Y +F
Sbjct: 115 CTPEPSNPQDAQVAQVYLQNYQQF 138
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 81.0 bits (191), Expect = 2e-16
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +3
Query: 183 LKKQLAELNKNPVEGFSA-GLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLR 359
L K+ A + G + D D++ W+ +I GP +T YEGG + ++ + YP+
Sbjct: 8 LHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPIS 67
Query: 360 PPRMKFVTEIWHPNID-KNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISM 536
PP + F T+I HPNI NG+VC+ IL W P ++++ +++IS+
Sbjct: 68 PPSVYFQTKIVHPNISWTNGEVCMDIL-------------KTHWSPAWSLQSACLAIISL 114
Query: 537 LADPNDESPANVDAAKEWRERYSEFKKKVARC 632
L++ + SP NVDAAK R + RC
Sbjct: 115 LSNYDASSPLNVDAAKLLRTGDKTAYNSLVRC 146
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 70.9 bits (166), Expect = 2e-13
Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 6/148 (4%)
Frame = +3
Query: 228 FSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNID 407
+ L++DN + ++ V GP +T Y GG +K H+ P EYP + P + FV I+HPNID
Sbjct: 20 YEVTLVNDN-MQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNID 78
Query: 408 K-NGDVCISILHEPGDDKWGYEKASERWLPVHTVETIL-ISVISMLADPNDESPANVDAA 581
+ +G VC+ ++ ++ W P+ + I + + +L PN P N +AA
Sbjct: 79 ELSGSVCLDVI-------------NQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAA 125
Query: 582 ----KEWRERYSEFKKKVARCVRKSQED 653
+E Y++ + +AR K D
Sbjct: 126 ALLLREPNTYYAKVRDYIARYANKEDAD 153
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 69.7 bits (163), Expect = 6e-13
Identities = 38/121 (31%), Positives = 61/121 (50%)
Frame = +3
Query: 276 LIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNIDKNGDVCISILHEPGDD 455
L I P + Y+GG FK + YP PP++K + +I+HPNID G+VC++IL +
Sbjct: 56 LEIRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQD--- 112
Query: 456 KWGYEKASERWLPVHTVETILISVISMLADPNDESPANVDAAKEWRERYSEFKKKVARCV 635
W PV + +IL+ + + PN E P N +AA + + F +V +
Sbjct: 113 ----------WNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRTAM 162
Query: 636 R 638
+
Sbjct: 163 K 163
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 68.9 bits (161), Expect = 1e-12
Identities = 45/147 (30%), Positives = 73/147 (49%)
Frame = +3
Query: 180 LLKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLR 359
L+K+ LA L KNPVE A +N I +W +I GPPDT YEGG + L FP +YP +
Sbjct: 10 LMKEYLA-LQKNPVELVDAKPATEN-ILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFK 67
Query: 360 PPRMKFVTEIWHPNIDKNGDVCISILHEPGDDKWGYEKASERWLPVHTVETILISVISML 539
PP ++ +T N +C+S + + W P V TIL+ ++S +
Sbjct: 68 PPAIRMITP--SGRFQTNTRLCLSF----------SDFHPKSWNPSWMVSTILVGLVSFM 115
Query: 540 ADPNDESPANVDAAKEWRERYSEFKKK 620
++ + + ++ R Y++ K+
Sbjct: 116 TS-DEITTGGIVTSESTRRTYAKDTKR 141
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 38.3 bits (85), Expect = 0.002
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 246 DDNDIYKWEVLIIGPPDTLYEGGFFKAHLNFPKEYPLRPPRMKFVTEIWHPNID 407
DD + W I+GP +++E + ++ YP PP + FV+ I P +D
Sbjct: 34 DDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVD 87
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 33.5 bits (73), Expect = 0.044
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
Frame = -3
Query: 607 SEYRSLHSFA----ASTLAGLSSFGSASIEMTLISIVSTVCTGNH 485
S+Y +++S STL SF +AS+ TLI+I ++ CTGN+
Sbjct: 41 SQYTTIYSDGPSEYTSTLPYTHSFSNASVYTTLITITNSQCTGNY 85
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 523 VSFQCSLIQMMRVPLMLMLQKNGENDIRNSKRKLPDVLGKVKKIASRS 666
+S Q + MR+P + NS +K D L K++K+ SRS
Sbjct: 330 LSIQSRAFKKMRLPKISRTTDTPPASTSNSNKKNLDKLKKMRKLCSRS 377
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 471 KASERWLPVHTVETILISVISMLADPNDESPANVDA 578
K ++ W+P+H L + ML PN +P +DA
Sbjct: 196 KLTDEWVPLHGGSGELR--VQMLYKPNQSTPLTIDA 229
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +3
Query: 183 LKKQLAELNKNPVEGFSAGLIDDNDIYKWEVLIIGPPDTLYE 308
L+++ + KN GF +G+++D+ I ++ +G P Y+
Sbjct: 187 LERKPVGMAKNLRGGFGSGVLNDDGIEDQDIYDLGAPKMRYD 228
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 159 SEPQSSLLLKKQLAELNKNPVEGFSAGLIDDNDIYK 266
SEPQ L AEL N ++ F +DD ++Y+
Sbjct: 1780 SEPQEQYLSSSNYAELFSNQIQLF----VDDTNVYR 1811
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 538 SLIQMMRVPLMLMLQKNGENDI 603
SL+ +M+ PL+ L+KN ND+
Sbjct: 1351 SLLPLMQSPLVFCLRKNDANDL 1372
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 28 IGNSLKILSNSYVSQPAQNSASHLLSKNHLFRV 126
IGN + N +SQP +ASH HL RV
Sbjct: 166 IGNDIYDTQNKLISQPTFVTASH--EAQHLLRV 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,470,435
Number of Sequences: 5004
Number of extensions: 74597
Number of successful extensions: 258
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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