Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E04
         (981 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    29   3.6  
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   6.2  

>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 741 PXXPXXXXXXXXXXGGGGPXPPXGXXXXGGXXTPPXXGK 625
           P  P          GGGG  PP      GG   PP  GK
Sbjct: 33  PHPPVPKPPQHGGGGGGGSKPPPHHGGKGGGKPPPHGGK 71


>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 696 GGGPXPPXGXXXXGGXXTPPXXGKPXP 616
           GGGP PP      GG   PP  G P P
Sbjct: 676 GGGPPPPP-PPPGGGPPPPPGGGPPPP 701



 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = -3

Query: 697 GGGPXPXKXVXXXGGXXXPPXXGXAPPP 614
           GGGP P       GG   PP  G  PPP
Sbjct: 676 GGGPPPPPP-PPGGGPPPPPGGGPPPPP 702


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,360,447
Number of Sequences: 28952
Number of extensions: 204328
Number of successful extensions: 389
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2382734760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)