Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E03
         (916 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33985.1 68417.m04822 expressed protein                             29   5.7  
At3g13590.1 68416.m01711 DC1 domain-containing protein contains ...    29   5.7  
At2g03120.1 68415.m00265 signal peptide peptidase family protein...    28   7.5  

>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 146 HEMRSRA*AEETWLRRKSHEELGMSGRAR 232
           H     A  EE WLR+K  + LG  GR++
Sbjct: 19  HSWSPDADREEAWLRKKGKQSLGRLGRSK 47


>At3g13590.1 68416.m01711 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 513

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 223 TRHTQFLMRFSSKPCFLS---SCTRPHLVNVLASEPTQRTTKAKIINFCISIVSFE 65
           TR+   L + SSK    S   S    HLVNV   E + R ++  I   C S VSFE
Sbjct: 6   TRNMMTLSKRSSKTKTGSVWFSYLEEHLVNVHIFEESPRDSRDAICKLCKSTVSFE 61


>At2g03120.1 68415.m00265 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 344

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 433 FDAWYGWKNHW 465
           F AWY WK HW
Sbjct: 151 FCAWYAWKKHW 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,542,763
Number of Sequences: 28952
Number of extensions: 216485
Number of successful extensions: 641
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)