Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E02
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    27   2.8  
SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces ...    27   3.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   8.6  

>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 504 AKCGSRSTXRAETRGNYLSLLNEQSASESSHQH 406
           A+C + S+ R  +RG Y+  +N+ S+ E +H H
Sbjct: 669 ARCIAISS-RLVSRGQYIHTINQLSSREEAHNH 700


>SPBC21C3.11 |ubx4||UBX domain protein Ubx4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 425

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 224 QESRNAALFTSNYRVLPHIVLAVRFVSSDVVRGHLRAD 337
           +ES +  L  SNY  LP   L V  +   VVR H  +D
Sbjct: 382 EESTSFQLTFSNYEALPTTGLIVEHIGRAVVRVHTISD 419


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 438 EQSASESSHQHTWLHXSAWDXRAESRYTPDRDHTSARKCPRTTSED 301
           ++   + SH H   H  + D   E     DR+H   RK   T  ED
Sbjct: 714 KKDTQKQSHDHGHSHSKSHDREKEKEKKKDREH---RKHRETEEED 756


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,399
Number of Sequences: 5004
Number of extensions: 53268
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)