Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E02
         (914 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)                  33   0.24 
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)                       31   0.98 
SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        31   1.7  
SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)              29   6.9  
SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)                     28   9.2  
SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)                     28   9.2  

>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
          Length = 429

 Score = 33.5 bits (73), Expect = 0.24
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
 Frame = +3

Query: 291 CGSCPPTLSVDICEPMCGPGQECNGTQLXCPTHXGGAMCVDAMTQRHFVHLVKKGNCPEF 470
           C S  P L V  C   CG G +     + C +      C ++    H V   +KG CP +
Sbjct: 3   CNSTIPILDVLQCSVTCGAGVKRR--TVTCTSD--NITCNESQKPPH-VARCEKGECPRW 57

Query: 471 PRGPWI-CSHTWHRATRTALV 530
             G W  CS T     RT  V
Sbjct: 58  TAGAWSECSSTCGSGVRTRFV 78


>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 675

 Score = 31.5 bits (68), Expect = 0.98
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 327 CEPMCGPGQECNGTQLXCPTHXGGAMCVDAMTQRHFVHLVKKGNCPEFPRGPW-ICSHT 500
           C   CG G+     Q+ C     G+ C D  T+   V +   G CP +  GPW  CS T
Sbjct: 372 CSVTCGSGKASR--QVLC--EPAGSQC-DNATRPASVRVCALGECPTWKSGPWEKCSKT 425


>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 210 MTREFKSPEMLRYLLLIIVSCLTSYSLCGSCPPTLSVDICEPMC-GP 347
           +T  F+ P    Y+L  I+ C + + +C +C P L+   C P C GP
Sbjct: 31  LTSIFECPVCFDYVLPPILQCSSGHLVCSNCRPKLT---CCPTCRGP 74


>SB_28368| Best HMM Match : Pentaxin (HMM E-Value=9.5e-11)
          Length = 1160

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = +3

Query: 261 IVSCLTSY--SLCGSCPPTLSVDICEPMCGPGQECNGTQLXC 380
           I+ C  S   S CG C      D C   C  GQ  +GT+  C
Sbjct: 607 IMGCTESNKPSKCGRCRHAKKGDTCVSTCDAGQAPSGTEREC 648


>SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)
          Length = 428

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 273 LTSYSLCGSCPPTLSVDI----CEPMCGPGQECNGTQLXCPTHXGGAMCVD 413
           ++ +++  +CPP   +      C+  C    +C G QL C    G  MC+D
Sbjct: 38  ISLFAMKDTCPPRAFIPFPGEPCQHTCQVDNDCPGNQLCCDN--GCNMCMD 86


>SB_28212| Best HMM Match : C1_3 (HMM E-Value=0.59)
          Length = 218

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 217 VSSRVQKCCVIYF*LSCPASHRTRCAVRVLRRCPWTFASRCV 342
           V+ RV  CCV  F + C A    RC    + RC      RCV
Sbjct: 92  VACRVM-CCVACFVMHCVACCVMRCVACCVMRCVACCVMRCV 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,285,453
Number of Sequences: 59808
Number of extensions: 480801
Number of successful extensions: 1372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)