Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E02
         (914 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64140.1 68414.m07266 expressed protein similar to putative d...    31   1.4  
At3g58020.1 68416.m06466 DNAJ heat shock N-terminal domain-conta...    25   3.8  
At1g66020.1 68414.m07493 terpene synthase/cyclase family protein...    29   5.7  
At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6    29   5.7  
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    28   7.5  

>At1g64140.1 68414.m07266 expressed protein similar to putative
           disease resistance protein GB:CAB40943 GI:4586107 from
           [Arabidopsis thaliana]; weak similarity to Loricrin
           (Swiss-Prot:P23490) [Homo sapiens]
          Length = 646

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +3

Query: 342 GPGQECNGTQLXCPTHXGGAMCVDAMTQRHFVHLVKKGNCPEFPRG 479
           G G+   G+   C  H GG  C     +  +      G C  F RG
Sbjct: 491 GCGKSAQGSTDFCKAHGGGKRCAWGQPETEYAGQSSSGPCTSFARG 536


>At3g58020.1 68416.m06466 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 580

 Score = 24.6 bits (51), Expect(2) = 3.8
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -3

Query: 546 TALGGARGQSES----PGAKCGSRSTXRAETRGNYLSLLNEQSASESSHQHTWLHXSAWD 379
           TALGG+RG S S     G + G  S    ++ G+   L  E+   E  ++++    S  +
Sbjct: 294 TALGGSRGFSWSNTREGGTRSGRYSNNFRKSWGSRYRLDEEEEEEEEEYEYSSTGVSDTE 353

Query: 378 XRAES 364
              ES
Sbjct: 354 PNQES 358



 Score = 23.0 bits (47), Expect(2) = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 363 RYTPDRDHTSARKCPRTTSEDTNRTASTM 277
           ++ PDR HTS +K  ++ S     T  ++
Sbjct: 386 KWHPDRHHTSTKKLIKSCSSTKMMTVKSV 414


>At1g66020.1 68414.m07493 terpene synthase/cyclase family protein
           contains Pfam profile: PF01397: Terpene synthase family
          Length = 598

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 237 MLRYLLLIIVSCLTSYSLCGSCPPTLSVDI 326
           +L+  L    S L S + CG+CPP LSV I
Sbjct: 210 ILQEALSFTSSHLESLAACGTCPPHLSVHI 239


>At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
          Length = 285

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 32  NSLKILNPDSFSQTRHMYIAISKLENRLWIIE 127
           +SL +  P +FS  +H+    +K E+R W+I+
Sbjct: 29  HSLSLSKPTTFSGPKHLSTRFTKPESRNWLID 60


>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
            (UBP16) similar to ubiquitin-specific protease 16
            GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 537  GGARGQSESPGAKCGSRSTXRAETRGNYLSLLNEQSASESSHQ 409
            G A GQSE+P     S S+    TR + LS  + ++   S HQ
Sbjct: 959  GRAHGQSETPSPTSSSSSSSPPFTRRSPLSRSSPETYGTSRHQ 1001


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,637,344
Number of Sequences: 28952
Number of extensions: 323984
Number of successful extensions: 784
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2168774904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)