Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E01
         (928 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   0.20 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   5.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect(2) = 0.20
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 718 NXPXPPPPP 744
           N P PPPPP
Sbjct: 729 NAPPPPPPP 737



 Score = 22.6 bits (46), Expect(2) = 0.20
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 730 PPPPPXPR 753
           PPPPP PR
Sbjct: 731 PPPPPPPR 738


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 670 AXPXPVXTPXHPXPPXNXPXPPPPPXPRXPXRPP 771
           A P  + +P  P    +   PPPP     P R P
Sbjct: 716 ASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 670 AXPXPVXTPXHPXPPXNXPXPPPPPXPRXPXRPP 771
           A P  + +P  P    +   PPPP     P R P
Sbjct: 608 ASPYMLQSPLTPHEAFDVKLPPPPHPHHQPPRNP 641


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 676 PXPVXTPXHPXPPXNXPXPPPPPXPRXPXRPP 771
           P P   P         P P  PP P  P  PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 874 PXPXXPXPPPPPXXPP 921
           P P  P  P PP  PP
Sbjct: 176 PLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.144    0.483 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,740
Number of Sequences: 336
Number of extensions: 2178
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25961683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)