Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_E01
         (928 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    31   0.011
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.74 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.9  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.011
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -1

Query: 793 GGVXXXGXGGAPXGXXXGGGVXGGXXGGGGGGXG 692
           GG      GG   G   G  V G   GGGGGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.74
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = +3

Query: 735 PPPXXXPXGAPPXPXXXTPPRXNXXIPP--PPXXP 833
           P P   P  +P  P   +PP  +   PP  PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +3

Query: 723 PPXTPPPXXXPXGAPPXPXXXTPPRXNXXIPP 818
           P     P     G+PP P    PP      PP
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 880 PXXPXPPPPPXXPPXP 927
           P  P PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 709 PPXNXPXPPPP 741
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +1

Query: 709  PPXNXPXPPPPPXPR 753
            P    P PPPPP PR
Sbjct: 1852 PVSGSPEPPPPP-PR 1865



 Score = 21.8 bits (44), Expect = 9.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 874  PXPXXPXPPPPP 909
            P    P PPPPP
Sbjct: 1852 PVSGSPEPPPPP 1863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.310    0.144    0.483 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,871
Number of Sequences: 438
Number of extensions: 6502
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30234750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)