Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D24
         (1062 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   5.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +3

Query: 888  PPPPXXPTQXXPAHXPHXXGXAGRPPXNXXSPXPTPPP 1001
            P PP  P    P   P   G AG  P     P P PPP
Sbjct: 750  PVPPPAPIMGGPPPPPPPPGVAGAGP----PPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 857 PPXPTXKXPTPPPAXXPHPXXA 922
           PP P    PTP PA  P P  A
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA 755


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +3

Query: 876  NXRXPPPPXXPTQXXPAHXPHXXGXAGRPPXNXXSPXPTPPP 1001
            N + PPPP  P++      P      G    N   P P PPP
Sbjct: 307  NKKRPPPPPPPSRRNRGKPP-----IGNGSSNSSLPPPPPPP 343


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 844 PPPXPXPPDXQTXDXPPRP 900
           PPP P PP  +    PP P
Sbjct: 9   PPPPPPPPGFEPPSQPPPP 27


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = -1

Query: 996 GGWGXGXGGXXVXGRXXRXGGAXGRAXXGWGXXAG--GGVGXLXVGXGG 856
           GG+G G GG    G     GG  G    G G   G  GG G    G GG
Sbjct: 224 GGFGGGPGGFE--GGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = -2

Query: 650 GXXGGXWGRGXWGGXXXXLXGXGXXRPRGRXG 555
           G  GG  GRG +GG      G G  R RGR G
Sbjct: 451 GGRGGFGGRGGFGGR----GGFGGGRGRGRGG 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,157,513
Number of Sequences: 5004
Number of extensions: 12679
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 559212080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)