Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D23
         (947 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...   149   7e-37
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   3.9  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   5.1  

>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score =  149 bits (360), Expect = 7e-37
 Identities = 75/190 (39%), Positives = 113/190 (59%), Gaps = 2/190 (1%)
 Frame = +3

Query: 120 CYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVL 299
           C+TL+     LE  +   LK  LE  +   KI A+K  + ++++G+ +P +LM +IRFV+
Sbjct: 3   CWTLVQ-QDFLEAPSVDALKTSLESKNDYVKISAMKTILRVVINGDSLPSILMHVIRFVM 61

Query: 300 PLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXX 479
           P ++  +KKLL  +WE+ PK + DG + QEMIL C+++  DLQHPNEFIRG+T       
Sbjct: 62  PSRNKELKKLLYYYWEVCPKYNNDGTMKQEMILACNSFRNDLQHPNEFIRGATLRFLCKL 121

Query: 480 XXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIXTIYRTL--XVPPXS*XPRSXYHTXLET 653
                    +P +R CLEHRH+YVR+NA+LA+ +IY+     +P  +    S     L  
Sbjct: 122 KEPELLDPLIPTVRQCLEHRHAYVRKNAILAVFSIYQVSNHLIPDAA----SLAEDFLAA 177

Query: 654 EPXXSCQRNA 683
           E   +C+RNA
Sbjct: 178 ESEGTCKRNA 187


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 304  NGNTNLIMIMSRPGIFSPESIIPIVFFNASIFFFVSPFSRSSLSCISLHG 155
            +GNTN  +I S+  +++     P VF N    FF   F     S IS++G
Sbjct: 1362 DGNTNEQIISSKLTVYASR-YAPDVFLNLGSLFFPFIFFGKHSSSISING 1410


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 102 AVVEQP-CYTLINFPTDLEPCNEMQLKLDLEKGD 200
           A+V+ P C+ L +    L PC EM+L +D E+G+
Sbjct: 442 AMVQNPACFNLDDSAGSLLPCTEMKL-VDCEEGN 474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,526
Number of Sequences: 5004
Number of extensions: 53352
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)