Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D23
(947 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 138 6e-33
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 127 1e-29
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 43 3e-04
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668... 30 2.3
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 7.1
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 9.4
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 138 bits (334), Expect = 6e-33
Identities = 68/162 (41%), Positives = 101/162 (62%), Gaps = 1/162 (0%)
Frame = +3
Query: 108 VEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 287
+E+PC L++F P ++K DLE D K++A+K+ I ++L+GE +P L + ++
Sbjct: 1 MEKPCTLLVHFDKG-SPSMANEIKADLEGSDVAAKVDAMKRAIMLLLNGETLPHLFITVV 59
Query: 288 RFVLPLQDHMIKKLLLIFWEIVPKTS-PDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXX 464
R+VLP +DH I+KLLL++ EIV K GK+L EMIL+C +LQHPNE+IRG T
Sbjct: 60 RYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMILICQNLRNNLQHPNEYIRGVTLR 119
Query: 465 XXXXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIXTIYR 590
+P+I A L+HRH ++RR+A+ AI IYR
Sbjct: 120 FLCRLNEPELLEPLIPSILANLDHRHHFIRRHALSAISAIYR 161
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 127 bits (307), Expect = 1e-29
Identities = 67/192 (34%), Positives = 105/192 (54%)
Frame = +3
Query: 108 VEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 287
+E+P L++F ++K DLE D K++A+K+ + ++L+GE +P L + ++
Sbjct: 1 MEKPSTLLVHFDKG-SAAMAGEIKADLEGSDVAAKVDAMKRAVMLLLNGETLPTLFITVV 59
Query: 288 RFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXX 467
R+VLP +DH I+KLLL++ EI+ K G+ L EMIL+C +L HPNE+IRG T
Sbjct: 60 RYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMILICQNLRNNLHHPNEYIRGVTLRF 119
Query: 468 XXXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIXTIYRTLXVPPXS*XPRSXYHTXL 647
+P+I L+HRH ++RR+A+ AI +IYR L
Sbjct: 120 LCRLSEPEVLEPLVPSILENLDHRHHFIRRHALSAISSIYRLPHGDQLVPDAPELVERAL 179
Query: 648 ETEPXXSCQRNA 683
+E S +RNA
Sbjct: 180 ASEQDASARRNA 191
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 43.2 bits (97), Expect = 3e-04
Identities = 29/127 (22%), Positives = 54/127 (42%)
Frame = +3
Query: 207 KKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQ 386
K+ +A+KK I + G+ + L ++ + ++ +KKL+ ++ K+ PD
Sbjct: 119 KRKDAVKKVIAAMTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLINYAKSQPD----- 172
Query: 387 EMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACLEHRHSYVRRNAV 566
IL + + KD Q PN IR ++ CL+ YVR+ A
Sbjct: 173 LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQRCLKDDDPYVRKTAA 232
Query: 567 LAIXTIY 587
+ + +Y
Sbjct: 233 ICVAKLY 239
>01_05_0501 +
22764978-22765896,22766087-22766349,22766613-22766836,
22767419-22767749,22767968-22768372
Length = 713
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +3
Query: 837 QPRAXXXXXXSPXXPLPXPXXPPPXPXP 920
QP A SP P P P PPP P P
Sbjct: 65 QPPAGIAVHPSPPPPPPPPPPPPPVPVP 92
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 7.1
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 867 SPXXPLPXPXXPPPXPXP 920
+P PLP P PPP P P
Sbjct: 245 APGLPLPPPPPPPPGPPP 262
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 9.4
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 870 PXXPLPXPXXPPPXPXP 920
P PLP P PPP P P
Sbjct: 426 PPPPLPPPPPPPPPPPP 442
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,678,492
Number of Sequences: 37544
Number of extensions: 404087
Number of successful extensions: 1826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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