Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D23
         (947 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)            231   5e-61
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)               29   7.3  
SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score =  231 bits (566), Expect = 5e-61
 Identities = 111/161 (68%), Positives = 121/161 (75%)
 Frame = +3

Query: 111 EQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIR 290
           EQPCYTLIN P + E   E +LK D+EKGD K K E LKK I +IL+GEK P LLM +I+
Sbjct: 196 EQPCYTLINIPNEQESPTEQKLKEDIEKGDVKVKTETLKKVIQMILNGEKFPTLLMTVIK 255

Query: 291 FVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXX 470
           F++PLQDH IKKLLLIFWEIVPKT  DGKLL EMILVCDAY KDLQHPNEFIRGST    
Sbjct: 256 FLMPLQDHTIKKLLLIFWEIVPKTGADGKLLHEMILVCDAYRKDLQHPNEFIRGSTLRFL 315

Query: 471 XXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIXTIYRT 593
                       MPAIR CLEHRHSYVRRNAV+AI TIYRT
Sbjct: 316 CKLKEAELLEPLMPAIRTCLEHRHSYVRRNAVMAIYTIYRT 356


>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 771 PPXPXXXLQXAHXPXXXLXXXXQPRAXXXXXXSPXXPLPXPXXPPPXPXP 920
           PP P      A  P         P A       P  PLP P  PP  P P
Sbjct: 54  PPSPPAAAPAAPPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAP 103


>SB_28149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 171 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIII 287
           + +LD+     K  IE +KK I  IL+ E +P +L +I+
Sbjct: 79  EAELDINLQTLKPNIECMKKAIEEILNSETLPEVLQLIL 117


>SB_23199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 512 WH*GFKEFRLFQLAEKTQSRSTNELIRMLKILXIGIT 402
           WH  F+EFR F+L    + R+   L++  KI+ +  T
Sbjct: 4   WHLPFQEFRAFELLRSGRDRTNYLLVKEAKIIAMTCT 40


>SB_23066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 898

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 506 NASHTGLSRAQTFVCQEECCSCYLYH 583
           NAS TG  + Q  +C+  CC C + H
Sbjct: 65  NASSTGAEKVQARLCRYPCCVCGIRH 90


>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 575 DSKNSIPPDIRMSVLETGPYGWH*GFKEFRLFQLAEKTQSRSTNELIRML 426
           D+  S+PP++R+   +TGP G     ++FR ++  E    +   E ++ L
Sbjct: 35  DNAGSLPPNMRLQTPKTGPKG---VIQDFRRYKQLETEHKKEQEEELKAL 81


>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
          Length = 1878

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 867  SPXXPLPXPXXPPPXPXPXT 926
            SP  P P P  PPP P P T
Sbjct: 1310 SPPPPPPPPPPPPPPPLPPT 1329


>SB_52312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 522 ACLEHRHSYVRRNAVLAIXTIYRTLXVPP 608
           +C EH HS ++ N  L I  +++   +PP
Sbjct: 568 SCAEHAHSLLKANGALLIDLLHKFPDLPP 596


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,416,581
Number of Sequences: 59808
Number of extensions: 406626
Number of successful extensions: 1111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2776707833
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)