Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D23
(947 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical ... 213 2e-55
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 47 2e-05
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 47 2e-05
Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical p... 44 1e-04
Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 6.4
>AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical
protein Y25C1A.5 protein.
Length = 971
Score = 213 bits (520), Expect = 2e-55
Identities = 114/202 (56%), Positives = 135/202 (66%), Gaps = 2/202 (0%)
Frame = +3
Query: 99 MAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIP-GLL 275
M+ EQPCYTLI+ P+D E +E QLK EKG K++IEALKK I +IL+GEK +L
Sbjct: 1 MSSGEQPCYTLIHVPSDAELPSEAQLKEKFEKGGDKERIEALKKLIYMILNGEKTSQSML 60
Query: 276 MIIIRFVLPLQDHMIKKLLLIFWEIVPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGS 455
M +IRF LP +H +KK+LLIFWE VPKT +GKLL EMILVCDAY KDLQHPNEF+RGS
Sbjct: 61 MYVIRFCLPSNEHTLKKVLLIFWECVPKTDSNGKLLHEMILVCDAYRKDLQHPNEFVRGS 120
Query: 456 TXXXXXXXXXXXXXXXXMPAIRACLEHRHSYVRRNAVLAIXTIYRTL-XVPPXS*XPRSX 632
T MPAIRACLEHRHSYVRRNAV AI TIY+ + P + +
Sbjct: 121 TLRFLCKLREPELLEPLMPAIRACLEHRHSYVRRNAVCAIFTIYKNFEFLIPDAPELVTE 180
Query: 633 YHTXLETEPXXSCQRNAXXLXL 698
Y LE E SC+RNA + L
Sbjct: 181 Y---LEQEQDASCKRNAFMMLL 199
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/139 (22%), Positives = 59/139 (42%)
Frame = +3
Query: 171 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEI 350
+LK +L +KK EA+KK I + G+ + L ++ + + +KKL+ ++
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNVELKKLVYLYLMN 75
Query: 351 VPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACL 530
K+ PD I+ + + KD + PN IR +R C+
Sbjct: 76 YAKSQPD-----LAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPLRRCM 130
Query: 531 EHRHSYVRRNAVLAIXTIY 587
+ YVR+ A + + ++
Sbjct: 131 KDEDPYVRKTAAVCVAKLH 149
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 46.8 bits (106), Expect = 2e-05
Identities = 31/139 (22%), Positives = 59/139 (42%)
Frame = +3
Query: 171 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEI 350
+LK +L +KK EA+KK I + G+ + L ++ + + +KKL+ ++
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVN-CMQTDNVELKKLVYLYLMN 75
Query: 351 VPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACL 530
K+ PD I+ + + KD + PN IR +R C+
Sbjct: 76 YAKSQPD-----LAIMAVNTFVKDCEDPNPLIRALAVRTMGCIRVEKITEYLCDPLRRCM 130
Query: 531 EHRHSYVRRNAVLAIXTIY 587
+ YVR+ A + + ++
Sbjct: 131 KDEDPYVRKTAAVCVAKLH 149
>Z83122-10|CAB05601.1| 896|Caenorhabditis elegans Hypothetical
protein R11A5.1b protein.
Length = 896
Score = 44.4 bits (100), Expect = 1e-04
Identities = 33/138 (23%), Positives = 60/138 (43%)
Frame = +3
Query: 174 LKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIV 353
LK L+ K++A+K+ I +I G+ + L +++ V ++ +KKL+ ++
Sbjct: 19 LKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAA-KNVELKKLVFVYLVRY 77
Query: 354 PKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACLE 533
+ D LL + + L+ PN+ IRGS + AI+ +
Sbjct: 78 AEEQQDLALLS-----ISTFQRALKDPNQLIRGSALRVLTSIRVPMVAPIMLLAIKDAVR 132
Query: 534 HRHSYVRRNAVLAIXTIY 587
YVR+ A AI +Y
Sbjct: 133 DMSPYVRKVAAHAIPKLY 150
>Z83122-9|CAB05598.1| 906|Caenorhabditis elegans Hypothetical
protein R11A5.1a protein.
Length = 906
Score = 44.4 bits (100), Expect = 1e-04
Identities = 33/138 (23%), Positives = 60/138 (43%)
Frame = +3
Query: 174 LKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEIV 353
LK L+ K++A+K+ I +I G+ + L +++ V ++ +KKL+ ++
Sbjct: 19 LKAMLDSNKDNLKVDAMKRIINLIAKGKDVSELFAAVVKNVAA-KNVELKKLVFVYLVRY 77
Query: 354 PKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACLE 533
+ D LL + + L+ PN+ IRGS + AI+ +
Sbjct: 78 AEEQQDLALLS-----ISTFQRALKDPNQLIRGSALRVLTSIRVPMVAPIMLLAIKDAVR 132
Query: 534 HRHSYVRRNAVLAIXTIY 587
YVR+ A AI +Y
Sbjct: 133 DMSPYVRKVAAHAIPKLY 150
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 867 SPXXPLPXPXXPPPXPXPXT 926
SP P P P PPP P P T
Sbjct: 353 SPPAPPPPPPPPPPPPPPQT 372
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,611,911
Number of Sequences: 27780
Number of extensions: 321281
Number of successful extensions: 1091
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2454664212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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