Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D23
         (947 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   9.3  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
 Frame = -1

Query: 314 VILQW-QHEPNNDHEQTWYL 258
           V+  W  H PN D    WY+
Sbjct: 657 VLALWLNHSPNYDQVTNWYM 676


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 515 HTGLSRAQTFVCQEECC 565
           HT +  +Q+   Q++CC
Sbjct: 795 HTDIGNSQSLAHQDQCC 811


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 514 PYGPVSSTDIRMSGGMLFLLSXPYIGP 594
           P G VSST+   SG +  L    ++ P
Sbjct: 489 PLGSVSSTESTCSGEVASLTEYHHVAP 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,008
Number of Sequences: 438
Number of extensions: 4418
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31081323
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)