Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D23
(947 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 140 1e-33
At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-... 140 1e-33
At4g23460.1 68417.m03381 beta-adaptin, putative strong similarit... 44 1e-04
At4g11380.1 68417.m01835 beta-adaptin, putative strong similarit... 44 1e-04
At2g07040.1 68415.m00805 leucine-rich repeat transmembrane prote... 30 2.0
At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K) ... 29 4.5
At5g53660.1 68418.m06665 expressed protein 28 7.9
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 28 7.9
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 140 bits (339), Expect = 1e-33
Identities = 73/176 (41%), Positives = 101/176 (57%)
Frame = +3
Query: 156 PCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLL 335
P ++K LE D + K++A+KK I ++L+GE IP L + IIR+VLP +DH I+KLLL
Sbjct: 16 PAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLL 75
Query: 336 IFWEIVPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPA 515
++ E++ KT GK+L EMIL+C +LQHPNE+IRG T P+
Sbjct: 76 LYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPS 135
Query: 516 IRACLEHRHSYVRRNAVLAIXTIYRTLXVPPXS*XPRSXYHTXLETEPXXSCQRNA 683
+ LEHRH +VRRNA+LAI +IY+ L TE S +RNA
Sbjct: 136 VLQNLEHRHPFVRRNAILAIMSIYKLPHGDQLFVDAPEMIEKVLSTEQDPSAKRNA 191
>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 971
Score = 140 bits (339), Expect = 1e-33
Identities = 73/176 (41%), Positives = 101/176 (57%)
Frame = +3
Query: 156 PCNEMQLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLL 335
P ++K LE D + K++A+KK I ++L+GE IP L + IIR+VLP +DH I+KLLL
Sbjct: 39 PAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIRYVLPSEDHTIQKLLL 98
Query: 336 IFWEIVPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPA 515
++ E++ KT GK+L EMIL+C +LQHPNE+IRG T P+
Sbjct: 99 LYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRMKETEIVEPLTPS 158
Query: 516 IRACLEHRHSYVRRNAVLAIXTIYRTLXVPPXS*XPRSXYHTXLETEPXXSCQRNA 683
+ LEHRH +VRRNA+LAI +IY+ L TE S +RNA
Sbjct: 159 VLQNLEHRHPFVRRNAILAIMSIYKLPQGDQLFVDAPEMIEKVLSTEQDPSAKRNA 214
>At4g23460.1 68417.m03381 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 893
Score = 44.4 bits (100), Expect = 1e-04
Identities = 31/139 (22%), Positives = 59/139 (42%)
Frame = +3
Query: 171 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEI 350
+LK +L K+ +A+KK I + G+ + L ++ + ++ +KKL+ ++
Sbjct: 19 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLIN 77
Query: 351 VPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACL 530
K+ PD IL + + KD Q PN IR ++ CL
Sbjct: 78 YAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQKCL 132
Query: 531 EHRHSYVRRNAVLAIXTIY 587
+ YVR+ A + + ++
Sbjct: 133 KDDDPYVRKTAAICVAKLF 151
>At4g11380.1 68417.m01835 beta-adaptin, putative strong similarity
to SP|Q10567 Adapter-related protein complex 1 beta 1
subunit (Beta-adaptin 1) [Homo sapiens], beta-adaptin
[Drosophila melanogaster] GI:434902; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 894
Score = 44.4 bits (100), Expect = 1e-04
Identities = 31/139 (22%), Positives = 59/139 (42%)
Frame = +3
Query: 171 QLKLDLEKGDTKKKIEALKKTIGIILSGEKIPGLLMIIIRFVLPLQDHMIKKLLLIFWEI 350
+LK +L K+ +A+KK I + G+ + L ++ + ++ +KKL+ ++
Sbjct: 19 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVN-CMQTENLELKKLVYLYLIN 77
Query: 351 VPKTSPDGKLLQEMILVCDAYXKDLQHPNEFIRGSTXXXXXXXXXXXXXXXXMPAIRACL 530
K+ PD IL + + KD Q PN IR ++ CL
Sbjct: 78 YAKSQPD-----LAILAVNTFVKDSQDPNPLIRALAVRTMGCIRVDKITEYLCDPLQKCL 132
Query: 531 EHRHSYVRRNAVLAIXTIY 587
+ YVR+ A + + ++
Sbjct: 133 KDDDPYVRKTAAICVAKLF 151
>At2g07040.1 68415.m00805 leucine-rich repeat transmembrane protein
kinase, putative
Length = 647
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 277 MSRPGIFSPESIIPIV--FFNASIFFFVSPFSRSSLSCISLHGSKSVGK 137
M R G + E+++PIV ++ FVS F + LHG KS+G+
Sbjct: 383 MKRLGRLNHENLLPIVAYYYKKEEKLFVSDFVANGSLAAHLHGHKSLGQ 431
>At5g38280.1 68418.m04615 serine/threonine protein kinase (PR5K)
identical to receptor serine/threonine kinase PR5K
gi|1235680|gb|AAC49208
Length = 665
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Frame = -2
Query: 301 GNTNLIMIMSRPGIFSPESIIPIVFFNA---SIFFFVSPFSRSSL---SCISLHGSKS 146
GN + + P +FSPE +P ++ S FF S F R +L + HGS+S
Sbjct: 607 GNLEALQVPPNPLLFSPEETVPDTLEDSDDTSTFFNPSHFERGTLLDSEDVLQHGSRS 664
>At5g53660.1 68418.m06665 expressed protein
Length = 365
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 75 QYIFNSFRMAVVEQPCYTLINFPTDLEPCNEMQLKLDLEKGDTKK 209
Q + + +A + P L++ P+ PCN + DLE G ++
Sbjct: 71 QAMIYKYMIASIPVPFDLLVSSPSSASPCNNKNIAGDLEPGRCRR 115
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 28.3 bits (60), Expect = 7.9
Identities = 17/65 (26%), Positives = 18/65 (27%)
Frame = +3
Query: 726 LXXPXFPSXXXXXXXPPXPXXXLQXAHXPXXXLXXXXQPRAXXXXXXSPXXPLPXPXXPP 905
L P PS PP P + P P P P P P P
Sbjct: 423 LTSPPPPSPPPPVYSPPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSP 482
Query: 906 PXPXP 920
P P P
Sbjct: 483 PPPSP 487
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,881,394
Number of Sequences: 28952
Number of extensions: 314657
Number of successful extensions: 1201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2275754832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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