Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D22
(983 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 199 6e-52
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 198 7e-52
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 38 0.002
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 38 0.003
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 37 0.004
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.19
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.33
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.44
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 4.1
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 4.1
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 27 5.4
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 5.4
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 27 5.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 7.1
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 199 bits (485), Expect = 6e-52
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +3
Query: 108 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 287
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 288 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 464
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIH 123
Score = 75.8 bits (178), Expect = 9e-15
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1
Query: 466 HARILIRQRPIRVRKQVVNXPSFIVRLDSGQHIDFSLKSPFGGGRP 603
HAR+LI QR IRV KQ+VN PSF+VRLD+ +HIDF+L SP+GGGRP
Sbjct: 124 HARVLIFQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRP 169
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 198 bits (484), Expect = 7e-52
Identities = 93/119 (78%), Positives = 105/119 (88%)
Frame = +3
Query: 108 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 287
P SKTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+E
Sbjct: 5 PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64
Query: 288 KDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIH 464
KDPKRLFEGNA++RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIH
Sbjct: 65 KDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIH 123
Score = 75.8 bits (178), Expect = 9e-15
Identities = 33/46 (71%), Positives = 40/46 (86%)
Frame = +1
Query: 466 HARILIRQRPIRVRKQVVNXPSFIVRLDSGQHIDFSLKSPFGGGRP 603
HAR+LI QR IRV KQ+VN PSF+VRLD+ +HIDF+L SP+GGGRP
Sbjct: 124 HARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRP 169
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 37.9 bits (84), Expect = 0.002
Identities = 22/97 (22%), Positives = 42/97 (43%)
Frame = +3
Query: 171 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 350
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 351 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 461
L K D + RRL + K +++ +
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVV 124
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 37.5 bits (83), Expect = 0.003
Identities = 23/84 (27%), Positives = 25/84 (29%)
Frame = +1
Query: 730 PPXPPPXXPPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXXSP 909
PP PPP P P + V P P P P P +P
Sbjct: 388 PPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 910 PPXPGHPXXPXAXXPPXAXPPPPP 981
P P P P A PP PP
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPP 471
Score = 29.1 bits (62), Expect = 1.0
Identities = 22/84 (26%), Positives = 24/84 (28%)
Frame = +1
Query: 730 PPXPPPXXPPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXXSP 909
P P PP PPP S +P PP P P + P
Sbjct: 246 PSLSAPAPPPIPPP------------SNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLP 293
Query: 910 PPXPGHPXXPXAXXPPXAXPPPPP 981
PP A PPPPP
Sbjct: 294 PPSSRVSAAALAANKKRPPPPPPP 317
Score = 28.3 bits (60), Expect = 1.8
Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Frame = +1
Query: 754 PPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXXSPPPXPGHPX 933
PP PPP R P PP PP + + PPP P P
Sbjct: 290 PPLPPPSSRVSAAALAANKKR----PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP-PR 344
Query: 934 XPXAXX---PPXAX--PPPPP 981
A PP PPPPP
Sbjct: 345 SNAAGSIPLPPQGRSAPPPPP 365
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/45 (31%), Positives = 16/45 (35%)
Frame = +1
Query: 841 PPXPXXXFXXPPXXHPXXHXXSPPPXPGHPXXPXAXXPPXAXPPP 975
P P PP P +PPP P P PP + P P
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIP-PPSNGTVSSPPNSPPRP 274
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 37.1 bits (82), Expect = 0.004
Identities = 29/87 (33%), Positives = 30/87 (34%)
Frame = -1
Query: 977 GGGGXAXGGXXAXGXXGXPGXGGGDXWWXXGWXXGGXXXXXXGXGGXCXGAQXTRXEXXX 798
GGG GG G G GG + G GG G GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGP--------G 238
Query: 797 XXXXXXXXXGGGXGGXXGGGXGGXGGG 717
GGG GG GGG GG GGG
Sbjct: 239 GFGGGPGGFGGGLGGF-GGGPGGFGGG 264
Score = 29.9 bits (64), Expect = 0.58
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -1
Query: 983 GGGGGGXAXGGXXAXGXXGXPGXGGGDXW 897
GG GGG G G G PG GG W
Sbjct: 245 GGFGGGLGGFGGGPGGFGGGPGGHGGPGW 273
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -1
Query: 983 GGGGGGXAXGGXXAXGXXGXPGXGGG 906
GG GGG G G G PG GG
Sbjct: 238 GGFGGGPGGFGGGLGGFGGGPGGFGG 263
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.007
Identities = 26/90 (28%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Frame = +1
Query: 730 PPXPPPXX-PPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXXS 906
PP P P PP P P + AP PP P PP P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 907 P------PPXPGHPXXPXAXXPPXAXPPPP 978
P PP P P P A PP P
Sbjct: 1143 PKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 34.7 bits (76), Expect = 0.020
Identities = 25/86 (29%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = +1
Query: 730 PPXPPPXX--PPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXX 903
PP P P PP P P P PP P PP P
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Query: 904 SPPPXPGHPXXPXAXXPPXAXPPPPP 981
P P G P P P A PP P
Sbjct: 1219 VPTPSAGLPPVPV----PTAKAPPVP 1240
Score = 32.3 bits (70), Expect = 0.11
Identities = 24/86 (27%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Frame = +1
Query: 730 PPXPPPXX--PPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXX 903
PP P P PP P P + V PP P PP P
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Query: 904 SPPPXPGHPXXPXAXXPPXAXPPPPP 981
P P G P P P + PP P
Sbjct: 1200 VPKPSVGVPPVP-----PPSTAPPVP 1220
Score = 31.9 bits (69), Expect = 0.14
Identities = 24/85 (28%), Positives = 25/85 (29%), Gaps = 2/85 (2%)
Frame = +1
Query: 730 PPXPPPXX--PPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXX 903
PP P P PP P P + V P PP P PP P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP-VPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Query: 904 SPPPXPGHPXXPXAXXPPXAXPPPP 978
P P P P P PP P
Sbjct: 1161 VPKPSVAAPPVP---APSSGIPPVP 1182
Score = 27.5 bits (58), Expect = 3.1
Identities = 22/86 (25%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Frame = +1
Query: 730 PPXPPPXXPPXPPPXXXXXXXXXXXXSXRVXWAPXXX---PPXPXXXFXXPPXXHPXXHX 900
P PP P P RV P PP P PP P
Sbjct: 982 PTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAP 1041
Query: 901 XSPPPXPGHPXXPXAXXPPXAXPPPP 978
P P P + P A PP P
Sbjct: 1042 PVPIPTSTPPVPKSSSGAPSAPPPVP 1067
Score = 25.8 bits (54), Expect = 9.4
Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Frame = +1
Query: 829 PXXXPPXPXXXFXXPPXXHPXXHXXSPPPXPG-HPXXPXAXXPPXAXPPPPP 981
P PP P P +PPP P P P A P P P
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 31.9 bits (69), Expect = 0.14
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 907 PPPXPGHPXXPXAXXPPXAXPPPPP 981
PP P P P PP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.19
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Frame = +1
Query: 841 PPXPXXXFXXP-----PXXHPXXHXXSPPPXPGHPXXPXAXXPPXAXPPPPP 981
PP P P P P PPP P P A PP PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP--PPPPP 783
Score = 29.5 bits (63), Expect = 0.76
Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Frame = +1
Query: 841 PPXPXXXFXXPPXXHPXXHXXSPPPXP---GHPXXPXAXXPPXAXPPPPP 981
PP P P P PPP P G P P A PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIP---VPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +1
Query: 904 SPPPXPGHPXXPXAXXPPXAXPPPPP 981
SPPP P P P PPP P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAP 756
Score = 26.6 bits (56), Expect = 5.4
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +1
Query: 841 PPXPXXXFXXPPXXHPXXHXXSPPPXPGHPXXPXAXXPPXAXPPP 975
PP P PP P PPP P P A P P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.33
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 770 GGGXGGXXGGGXGGXGGGXXEERGS 696
GGG GG GGG GG GG G+
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGGA 53
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = -1
Query: 770 GGGXGGXXG--GGXGGXGGGXXEERG 699
GG GG G GG GG GGG RG
Sbjct: 12 GGSRGGRGGFNGGRGGFGGGRGGARG 37
Score = 27.9 bits (59), Expect = 2.3
Identities = 22/68 (32%), Positives = 22/68 (32%)
Frame = -1
Query: 923 PGXGGGDXWWXXGWXXGGXXXXXXGXGGXCXGAQXTRXEXXXXXXXXXXXXGGGXGGXXG 744
PG GG G GG G GG G R GG GG G
Sbjct: 5 PGSRGG-----RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGR-G 58
Query: 743 GGXGGXGG 720
G GG GG
Sbjct: 59 GSSGGRGG 66
Score = 27.9 bits (59), Expect = 2.3
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 767 GGXGGXXGGGXGGXGGGXXEERG 699
GG GG GG G GGG RG
Sbjct: 23 GGRGGFGGGRGGARGGGRGGARG 45
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.44
Identities = 24/82 (29%), Positives = 24/82 (29%)
Frame = +1
Query: 730 PPXPPPXXPPXPPPXXXXXXXXXXXXSXRVXWAPXXXPPXPXXXFXXPPXXHPXXHXXSP 909
PP P P PPP P PP P PP P SP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPI-----------PSKAPPIPSSL---PPPAQPAAPVKSP 184
Query: 910 PPXPGHPXXPXAXXPPXAXPPP 975
P P P PP PPP
Sbjct: 185 PSAPSLP-SAVPPMPPKVPPPP 205
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = +1
Query: 841 PPXPXXXFXXPPXXHPXXHXXSPPPXPGHPXXPXAXXPPXAXPPP 975
PP P P P P P P A P + PPP
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/52 (26%), Positives = 15/52 (28%)
Frame = +1
Query: 826 APXXXPPXPXXXFXXPPXXHPXXHXXSPPPXPGHPXXPXAXXPPXAXPPPPP 981
AP P P P PPP P + PP PPP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +1
Query: 886 PXXHXXSPPPXPGHPXXPXAXXPPXAXPPPPP 981
P S PP P P P PP A PPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG--PPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 886 PXXHXXSPPPXPGHPXXPXAXXPPXAXPP--PPP 981
P +PPP P P + P A PP PPP
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 498 NRPLPDQNSGMDGWTS---PGQL*TPASADDAPRSPQSSDQAHN 376
+ P P Q + D WT+ PG + + + +P ++D AHN
Sbjct: 476 SNPPPSQKTNQDAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHN 519
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 4.1
Identities = 15/47 (31%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Frame = +1
Query: 841 PPXPXXXFXXPPXXHPXXHXXS--PPPXPGHPXXPXAXXPPXAXPPP 975
P P PP P P P PG+P P P A PP
Sbjct: 512 PGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPP 558
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 26.6 bits (56), Expect = 5.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = -1
Query: 770 GGGXGGXXGGGXGGXGGGXXEERG 699
G G GG G G GG GG G
Sbjct: 230 GAGLGGLGGAGLGGFGGANNATAG 253
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 5.4
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 483 DQNSGMDGWT--SPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYL 310
++N+ DG + +P + TPA DA SPQS H +V PV PD+ +
Sbjct: 18 NRNNSSDGLSLDTPLAIHTPAKGFDADLSPQSLYDLH----TVTTPVTPLAPDEWDFSLD 73
Query: 309 RTISWGPSP 283
++ PSP
Sbjct: 74 QSSGVIPSP 82
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 770 GGGXGGXXGGGXGGXGGGXXEERGSIXREG 681
GG GG G GG GGG G R G
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGG 177
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 7.1
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +2
Query: 395 D*GLLGASSADAGVQSWPGEVHPSMPEF*SGKGL 496
D GLLGA+S GVQS PG P G GL
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGL 1553
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,156
Number of Sequences: 5004
Number of extensions: 64021
Number of successful extensions: 338
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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