Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D21
         (1015 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.70 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   2.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   8.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   8.6  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
 Frame = +3

Query: 261 EKKGEVIXEAVKRLIENGKRNTMDFAYQL-------WTKDGKEIVKSYFPI-QFRVIFXE 416
           +  G  +   + ++ E+G R  + FA +        +T   KE++   F + +FR+    
Sbjct: 606 DSSGYGLGAELYQIQEDGSRGVIAFASRSLRGPELNYTTTEKELLGVIFALHKFRIYI-- 663

Query: 417 QTVKLINKRDHHALKLIDQ 473
           Q  K+I + DH ALK + +
Sbjct: 664 QVTKIIIRTDHQALKFLSR 682


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +1

Query: 511  TKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVXAPLTLQTPLV 690
            TKP+     +    W TT  T R+   R  +T S+ TR     T ++      T+  P V
Sbjct: 1037 TKPSTWWSSTTTSPWWTTTTTRRTTTTRPTTT-STTTRP----TTTNWPTQGTTIPPPAV 1091

Query: 691  LEPPVRKHS 717
            + P V K S
Sbjct: 1092 VMPEVDKPS 1100


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 586 PPRTNST*SSITRKVLVMTVSSTVXAPLTLQTP 684
           P  T +T S  T+     T SST   P T +TP
Sbjct: 401 PQPTQTTESEPTQASEQPTESSTTQKPQTTKTP 433


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 996 GXXRGGXRGXXXGXGGG 946
           G  RGG R    G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,070
Number of Sequences: 336
Number of extensions: 4333
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28764063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)