Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D21
(1015 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 38 0.002
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.037
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.064
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.064
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.34
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.79
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.79
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 1.0
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.0
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.2
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 27 5.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXP 961
P P P P P P P PPP PPP PPP P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 36.7 bits (81), Expect = 0.005
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +2
Query: 851 PXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXXPP 1000
P PP P P PP PP PPP P PP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 32.7 bits (71), Expect = 0.085
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +2
Query: 851 PXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXXPP 1000
P PP P PP PPP PPP PP PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXP 961
P P P P P P P PPP P PPP P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +3
Query: 900 PXXPPXXXPXXXPPXXPPXXXXXSPSXXXAXPPPPP 1007
P PP PP PP P A PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPP------PGVAGAGPPPPP 779
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.037
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = -2
Query: 987 RGGXRGXXXGXGGGXG--GGXXXXXXGGGXXGXXXXXXXXGXGXGGXG 850
RGG RG G GG G GG GGG G G GG G
Sbjct: 11 RGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58
Score = 31.9 bits (69), Expect = 0.15
Identities = 18/48 (37%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = -2
Query: 987 RGGXRGXXXGXGGGXGGGXXXXXXG--GGXXGXXXXXXXXGXGXGGXG 850
RGG G G GGG GG G GG G G GG G
Sbjct: 18 RGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 29.5 bits (63), Expect = 0.79
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = -2
Query: 996 GXXRGGXRGXXXGXGGGXGGGXXXXXXG-GGXXGXXXXXXXXGXGXGG 856
G GG G G GG GGG G GG G G GG
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGG 66
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = -2
Query: 996 GXXRGGXRGXXXGXGGGXGGGXXXXXXGGGXXG 898
G RGG RG G GG GG GG G
Sbjct: 37 GGGRGGARGGRGGRGGARGGRGGSSGGRGGAKG 69
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -2
Query: 999 GGXXRGGXRGXXXGXGGGXGG 937
G RGG RG G GG GG
Sbjct: 46 GRGGRGGARGGRGGSSGGRGG 66
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.064
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = +2
Query: 908 PPPXXXXXXPPPXPPPXPXXXPLXPPRXXP 997
PPP PPP PP P P PP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/35 (40%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Frame = +2
Query: 911 PPXXXXXXPPPXP---PPXPXXXPL--XPPRXXPP 1000
PP PPP P PP P P+ PP PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.1 bits (72), Expect = 0.064
Identities = 18/62 (29%), Positives = 19/62 (30%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXX 994
P P P P P P P P P PP P P P+ PP
Sbjct: 1141 PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI---PPVPKPAAGVPPVPPPSEA 1197
Query: 995 PP 1000
PP
Sbjct: 1198 PP 1199
Score = 31.1 bits (67), Expect = 0.26
Identities = 18/63 (28%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXP--PPXPXXXPLXPPR 988
P P P P P P P PPP P P PP P PP
Sbjct: 1180 PVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPV 1239
Query: 989 XXP 997
P
Sbjct: 1240 PAP 1242
Score = 30.7 bits (66), Expect = 0.34
Identities = 19/63 (30%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXX-PXXPPPXXXXXXPPPXPPPXPXXXPLXPPRX 991
P P P P P P P PPP PP P P P+ PP
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEA----PPVPKPSVGVPPVPPPST 1215
Query: 992 XPP 1000
PP
Sbjct: 1216 APP 1218
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/62 (24%), Positives = 16/62 (25%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXX 994
P P P P P P P PPP P P + P
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 995 PP 1000
PP
Sbjct: 1083 PP 1084
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/62 (27%), Positives = 18/62 (29%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXX 994
P P P P P P P P P PP P P P+ P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVP----SGAPPVPKPSVAAPPVPAPSGA 1158
Query: 995 PP 1000
PP
Sbjct: 1159 PP 1160
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/63 (28%), Positives = 19/63 (30%), Gaps = 1/63 (1%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXX-PXXPPPXXXXXXPPPXPPPXPXXXPLXPPRX 991
P P P P PP P P P PP PP P P P+ P
Sbjct: 1051 PVPKSSSGAPSAP-PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSV 1109
Query: 992 XPP 1000
P
Sbjct: 1110 AVP 1112
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/70 (25%), Positives = 19/70 (27%), Gaps = 1/70 (1%)
Frame = +2
Query: 794 PYSXXXHPXPXXXXXXPXXPXPPXPXPXXXXXXXXPXX-PPPXXXXXXPPPXPPPXPXXX 970
P S P P P P P P PP PP P P
Sbjct: 1053 PKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVP 1112
Query: 971 PLXPPRXXPP 1000
P+ P PP
Sbjct: 1113 PVPAPSGAPP 1122
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXX 994
P P P P P P P P P PP PPP P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGV---PPVPPPSTAPPVPTPSAGL 1226
Query: 995 PP 1000
PP
Sbjct: 1227 PP 1228
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/53 (26%), Positives = 15/53 (28%)
Frame = +2
Query: 842 PXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXXPP 1000
P P P P P PPP P P P+ P PP
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/63 (26%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPP--XPPPXPXXXPLXPPR 988
P P P P P P P P P P P PP P PP
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPV 1181
Query: 989 XXP 997
P
Sbjct: 1182 PKP 1184
Score = 25.8 bits (54), Expect = 9.7
Identities = 42/175 (24%), Positives = 53/175 (30%), Gaps = 10/175 (5%)
Frame = +1
Query: 505 PKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVXAPL---TL 675
P T P P S PP K++ + S PP + S I + + + V AP +
Sbjct: 1037 PSTAPPVPIPTSTPPVPKSSS-GAPSAPPPVPAPSSEIP-SIPAPSGAPPVPAPSGIPPV 1094
Query: 676 QTPLVLEPPVRKHSVXLHNKVXXXXXXXXXNRSIXIPIEALFXXXXPXXXXXXXXPXXXX 855
P V PPV K SV + S+ P + P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154
Query: 856 P--XXXXXXXXXXXPPXXXP----PPXXXP-XXPPPXXPPXXXXXPPXXXXXXPP 999
P PP P PP P PP PP P PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.34
Identities = 17/62 (27%), Positives = 17/62 (27%)
Frame = +2
Query: 815 PXPXXXXXXPXXPXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXX 994
P P P P P P PP PP P P PL P
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPA 475
Query: 995 PP 1000
PP
Sbjct: 476 PP 477
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +3
Query: 900 PXXPPXXXPXXXPPXXPPXXXXXSPSXXXAXPPPPP 1007
P P P PP PP P A PP PP
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Frame = +2
Query: 857 PPXPXPXXXXXXXXPXXPP---PXXXXXXP--PPXPPPXPXXXPL 976
PP P P P PP P P PP PP P PL
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459
Score = 26.6 bits (56), Expect = 5.6
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 899 PXXPPPXXXXXXPPPXPPPXPXXXPLXPPRXXP 997
P PPP P PP P PPR P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370
Score = 26.2 bits (55), Expect = 7.4
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +2
Query: 857 PPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXPXXXPLXPP 985
PP P P P PP PPP P P PP
Sbjct: 338 PPPPPPRSNAAGSIPL--PPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 26.2 bits (55), Expect = 7.4
Identities = 12/37 (32%), Positives = 12/37 (32%)
Frame = +2
Query: 851 PXPPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPPXP 961
P PP P PP PPP P P P
Sbjct: 448 PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/52 (32%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Frame = +2
Query: 857 PPXPXPXXXXXXXXPXXPPPXXXXXXPPPXPPP---XPXXXPLXPP-RXXPP 1000
PP P P P PPP PPP PL P R PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.79
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 935 PPPXPPPXPXXXPLXPPRXXPP 1000
PPP PPP P PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 892 PPXXXPPPXXXPXXPPPXXPP 954
PP PPP P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP 25
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 892 PPXXXPPPXXXPXXPPPXXPP 954
PP PPP P PP PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1
Query: 892 PPXXXPPPXXXPXXPPPXXPP 954
PP PP P PPP PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 935 PPPXPPPXPXXXPLXPPRXXPP 1000
PP PPP P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
Score = 26.2 bits (55), Expect = 7.4
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 842 PXXPXPPXPXPXXXXXXXXPXXPPP 916
P P PP P P P PPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +3
Query: 924 PXXXPPXXPPXXXXXSPSXXXAXPPPPP 1007
P PP PP PS PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPS--QPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +2
Query: 908 PPPXXXXXXPPPXPPPXP 961
PPP PP PPP P
Sbjct: 11 PPPPPPGFEPPSQPPPPP 28
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.79
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 581 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 480
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 309
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Frame = +2
Query: 851 PXPPXPXPXXXXXXXXPXXPPPXXXXXXP---PPXPPPXPXXXPLXPPRXXPP 1000
P P P P PP P PP P P P PP+ PP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +1
Query: 892 PPXXXPPPXXXPXXPPPXXPPXXXXXPPXXXXXXPP 999
PP PP P P PP PP PP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = -2
Query: 999 GGXXRGGXRGXXXGXGGGXGGGXXXXXXGGGXXG 898
G RGG RG G GG GG GG G
Sbjct: 136 GRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGG 169
Score = 27.9 bits (59), Expect = 2.4
Identities = 16/46 (34%), Positives = 16/46 (34%)
Frame = -2
Query: 987 RGGXRGXXXGXGGGXGGGXXXXXXGGGXXGXXXXXXXXGXGXGGXG 850
RGG RG G G GG GGG G G G G
Sbjct: 147 RGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
Score = 27.5 bits (58), Expect = 3.2
Identities = 18/52 (34%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Frame = -2
Query: 999 GGXXRGGXRGXXXGXGGGXG--GGXXXXXXGGGXXGXXXXXXXXGXGXGGXG 850
G RGG G G GG G GG GGG G G G G
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184
Score = 27.5 bits (58), Expect = 3.2
Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -2
Query: 999 GGXXRGGXRGXXXGX-GGGXGGGXXXXXXGGGXXG 898
GG RGG G G GGG GG GG G
Sbjct: 155 GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 192 QLYMSVVIGEY-ETAIAXCSEYLKEKKGEVIXEAVKRLIE 308
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 3.2
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 499 VTPKTKPARKSPGSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVXAPLTL 675
+TP P S S+P P T+ + S P T ST S T + SS++ P+T
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 676 QTP 684
P
Sbjct: 250 TVP 252
Score = 27.5 bits (58), Expect = 3.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 499 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVXAPLTLQ 678
VTP P S S PP +T T S P +++ S T + T +ST P+T
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST--TPVTPT 358
Query: 679 TP 684
P
Sbjct: 359 VP 360
Score = 27.5 bits (58), Expect = 3.2
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +1
Query: 499 VTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVXAPLTLQ 678
VTP P S S PP +T T S P +++ S T + T +ST P+T
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNST--TPVTPT 412
Query: 679 TP 684
P
Sbjct: 413 VP 414
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 436 TKGTITPSS*STXKXTTKLHSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SS 615
T T TP ++ T S P T + + S+PP +T + + PP + S+ S+
Sbjct: 310 TSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 369
Score = 26.6 bits (56), Expect = 5.6
Identities = 23/84 (27%), Positives = 36/84 (42%)
Frame = +1
Query: 436 TKGTITPSS*STXKXTTKLHSVTPKTKPARKSPGSLPPCWKTTEFTSRSCPPRTNST*SS 615
T T TP ++ T S T + + S+PP +T + + PP ++ST +
Sbjct: 364 TSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLT 423
Query: 616 ITRKVLVMTVSSTVXAPLTLQTPL 687
T +V T P+T TPL
Sbjct: 424 TTNCTTSTSVPYT-STPVT-STPL 445
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = +1
Query: 481 TTKLHSVTPKTKPARKSPGSLPPCW-KTTEFTSRSCPPRTNST 606
T+ L++ TP T P S S W TT T S T+ST
Sbjct: 595 TSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSST 637
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 26.6 bits (56), Expect = 5.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 258 KEKKGEVIXEAVKRLIENGKRNTMDFAYQLWTKDGKE 368
K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 139 KRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,470
Number of Sequences: 5004
Number of extensions: 65824
Number of successful extensions: 437
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 527257104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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