Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D20
(920 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 197 9e-51
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 186 2e-47
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 105 4e-23
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 3.0
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 9.1
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 197 bits (481), Expect = 9e-51
Identities = 99/222 (44%), Positives = 133/222 (59%)
Frame = +3
Query: 186 KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 365
K VPESVLK + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 366 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 545
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 546 VNMLRIAEPSIAWGYPNLKSVRELVYXRGFAKLSGPRIPITSNSXVEXXLHXPXXXXXXX 725
+NMLR EP +A+GYPNLKSVREL+Y RG+ KL+ RIP+ +N +E L
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 726 XXXXXXXXXXKFKYPSXSLWPFXLXHPTGXXXPXXHSYVDXG 851
FK + LWPF L P G + YV+ G
Sbjct: 187 LVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGG 228
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 186 bits (453), Expect = 2e-47
Identities = 96/224 (42%), Positives = 132/224 (58%), Gaps = 6/224 (2%)
Frame = +3
Query: 198 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 377
VPESVL+ + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 378 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 557
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 558 RIAEPSIAWGYPNLKSVRELVYXRGFAKLSGPRIPITSNSXVE------XXLHXPXXXXX 719
R EP +A+GYPNLKSVREL+Y RG+ KL+ RIP+T+N +E L
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 720 XXXXXXXXXXXXKFKYPSXSLWPFXLXHPTGXXXPXXHSYVDXG 851
FK + LWPF L P G + YV+ G
Sbjct: 190 EDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGG 233
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 707 IICVEDLLHEIFPVG 751
IIC+EDL+HEI VG
Sbjct: 186 IICIEDLVHEIMTVG 200
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 105 bits (253), Expect = 4e-23
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 3/215 (1%)
Frame = +3
Query: 171 KEDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 350
+E +++LP V E+VLK + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 351 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 521
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 522 FVRLNKATVNMLRIAEPSIAWGYPNLKSVRELVYXRGFAKLSGPRIPITSNSXVEXXLHX 701
F++ AT+ L + EP I +G+PNLK+V++L+Y +G L P+TSN +E L
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 702 PXXXXXXXXXXXXXXXXXKFKYPSXSLWPFXLXHP 806
F+ S L PF L P
Sbjct: 181 YGIICLEDLVHEIASVGPHFREASNFLMPFKLKCP 215
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 264 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 404
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 409 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 507
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,876,998
Number of Sequences: 37544
Number of extensions: 387787
Number of successful extensions: 815
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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