Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D20
         (920 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      226   2e-59
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   2.3  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_10118| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)                      29   7.0  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.0  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  226 bits (552), Expect = 2e-59
 Identities = 116/226 (51%), Positives = 142/226 (62%)
 Frame = +3

Query: 174 EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKE 353
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR KE
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 354 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRL 533
            DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPKVRK+LQL RLRQINNGVFVRL
Sbjct: 63  VDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVRL 122

Query: 534 NKATVNMLRIAEPSIAWGYPNLKSVRELVYXRGFAKLSGPRIPITSNSXVEXXLHXPXXX 713
           NKAT NMLRI +P IA+GYPNLKSVREL+Y RG+ K+   R+ +T NS VE  L      
Sbjct: 123 NKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGII 182

Query: 714 XXXXXXXXXXXXXXKFKYPSXSLWPFXLXHPTGXXXPXXHSYVDXG 851
                          FK  S  LWPF L  P G        +V+ G
Sbjct: 183 CVEDLIHEIFTVGEHFKEASNFLWPFKLSSPKGGFRKKTTHFVEGG 228


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 373 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 477
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 529 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 350
           RT  PLF    L  C   R    TW  P + +  + L       +      +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353

Query: 349 LMRYSLTY--CSALLKIS 302
           + ++ L +  CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371


>SB_10118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -2

Query: 622 YTNSRTLFKL-GYPQAMEGSAIRSIFTVALFRRTNTPLFIWRSLNSCRTLRTFGETWLIP 446
           Y   RTL K+  + +A E   +R+        R +    IW++  +CR + T  + W +P
Sbjct: 30  YQTRRTLTKIYSFFEAFEDKLMRNTKVEIQITRNSDATLIWQAGANCRVVITRLKLW-VP 88

Query: 445 RI 440
           RI
Sbjct: 89  RI 90


>SB_43038| Best HMM Match : AAA (HMM E-Value=0.84)
          Length = 957

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 507 INNGVFVRLNKATVNMLRIAEPSIAWGYPNLKSVRELVY 623
           IN G    +N++ VN+ R A  S  + YP++KSVR  +Y
Sbjct: 250 INKGTDSIINES-VNLPRRARDSEKFVYPDIKSVRVTIY 287


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 276 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 401
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 276 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 401
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,048,685
Number of Sequences: 59808
Number of extensions: 447916
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)