Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D19
         (947 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   2.0  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   3.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   8.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   8.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 909 GGGRGGGXXGXRXAXXG 859
           GGGRGGG  G R    G
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 796 PPXPXXPSXPXPXAHPPXPXXP 861
           PP P  P  P P   PP    P
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINP 196



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 19/58 (32%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
 Frame = +2

Query: 776 PPXXXSPPPXPXXXPFPX---PXPT-PPXPXXPXXAXRXPXXPP-PLPPPXPPXXXPP 934
           PP        P   P P    P P  PP           P  PP PLPP  PP    P
Sbjct: 139 PPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 8.0
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
 Frame = +2

Query: 791 SPPPXPXXXPFPXPXPTP----PXPXXPXXAXRXPXXPP--PLPP-PXPPXXXP 931
           SPP        P   P P    P P  P         PP   +PP P PP   P
Sbjct: 138 SPPGNVLNLTMPKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +2

Query: 875 RXPXXPPPLPPPXPPXXXP 931
           + P  P P PP  PP   P
Sbjct: 21  KRPHSPEPYPPRCPPIYEP 39


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 899 LPPPXPPXXXPPXPP 943
           LPPP  P   PP  P
Sbjct: 735 LPPPPHPHHQPPRNP 749


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 899 LPPPXPPXXXPPXPP 943
           LPPP  P   PP  P
Sbjct: 627 LPPPPHPHHQPPRNP 641


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,468
Number of Sequences: 336
Number of extensions: 4634
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26685714
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)