Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D18
(985 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.72
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.72
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.72
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 30 2.2
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 30 2.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 2.9
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.9
U64837-2|AAB04836.3| 213|Caenorhabditis elegans Hypothetical pr... 29 3.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.8
L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical pr... 29 6.7
L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical pr... 29 6.7
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 28 8.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P PPP PP P P K PPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P P PP PP P P PPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P PPP PP P P K PPP
Sbjct: 752 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P P PP PP P P PPP
Sbjct: 742 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.72
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P PPP PP P P K PPP
Sbjct: 335 PPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P P PP PP P P PPP
Sbjct: 325 PPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 420 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 527
D ++ DA N T +LID K+GD +A+ +A G
Sbjct: 62 DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 420 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 527
D ++ DA N T +LID K+GD +A+ +A G
Sbjct: 62 DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 30.3 bits (65), Expect = 2.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 420 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 527
D ++ DA N T +LID K+GD +A+ +A G
Sbjct: 62 DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXP 877
PP P P PPP PP P P
Sbjct: 132 PPPPPPPPHYPPPPPHYPPPPPAP 155
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P PPP PP P P PPP
Sbjct: 280 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P PPP PP P P PPP
Sbjct: 301 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXPTXX*KKKXXPPP 913
PP P PPP PP P P PPP
Sbjct: 286 PPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
>U64837-2|AAB04836.3| 213|Caenorhabditis elegans Hypothetical
protein T27E4.5 protein.
Length = 213
Score = 29.5 bits (63), Expect = 3.8
Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Frame = +3
Query: 186 NAPRTMLKTKSLXVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCD---K 356
++PRT+ L ++A R+ C + +D N+ T +EE +PN + + K + +
Sbjct: 23 SSPRTL--KLCLYLKAIRRSTAECDQVTLD-NL--TSVEENQPNSTMSPLAKIIANIEKR 77
Query: 357 SAQLKGCISSVLQGVR-PCVGNDYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGGPE 533
+ ++K GV P ++ + + + C + A PE
Sbjct: 78 NEKVKMTKKFKKFGVPLPMCSSNLESGYKQCRMDITCSSGYSCENNSKTRCCMEANHSPE 137
Query: 534 CFQQKTENLKTCFLNLKQSFPTVESANNLSLVEKCAKVDEMTSCIVKSLEXC 689
++KTE KTC L+ ++ +++ V+ C K D+ C+ +++ C
Sbjct: 138 -IERKTEEFKTCPSQLQMAYFCQKTSTARKTVKPC-KTDQ--DCMFSNVQKC 185
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +2
Query: 806 PPXPSXPXKXPPPXXXXPPXXPXP 877
PP P P PPP PP P P
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMP 89
>L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical
protein ZC262.5 protein.
Length = 54
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 131 AAGVLADDFSQITAVVTSQCTKNNAEDKVP 220
AAG+ +SQI A V QCTK A K P
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP 35
>L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical
protein R05D3.6 protein.
Length = 54
Score = 28.7 bits (61), Expect = 6.7
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 131 AAGVLADDFSQITAVVTSQCTKNNAEDKVP 220
AAG+ +SQI A V QCTK A K P
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP 35
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.3 bits (60), Expect = 8.9
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = -2
Query: 912 GGGXXFFF*XXVGXGXXGGXXXXGGGXFXGXXGXGG 805
GGG F G G GG GGG G G GG
Sbjct: 83 GGGAFGGFNGGYGQGGYGGGGDFGGGMGGGGYGGGG 118
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,806
Number of Sequences: 27780
Number of extensions: 364235
Number of successful extensions: 1481
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2563248310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -