Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D17
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.2  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 868 PPXXXPPLXXPPXXQPPXXPP 930
           PP   PP   PP  +PP  PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 868 PPXXXPPLXXPPXXQPPXXPP 930
           PP   PP   PP   PP  PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 868 PPXXXPPLXXPPXXQPPXXPP 930
           PP   PP    P  QPP  PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +1

Query: 868  PPXXXPPLXXPPXXQPPXXPPXXXXXLPXXQXPPPXXXP 984
            PP   P    PP   P   PP     +     PPP   P
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAP 1217



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +1

Query: 868  PPXXXPPLXXPPXXQPPXXPPXXXXXLPXXQXP-PPXXXP 984
            PP   PP+  P    PP  PP     +P      PP   P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 701 PSXALXVPTPAXXRIPVRXPLRXXGXXHP 787
           P  A+ VPTPA   IPV  P    G   P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,397
Number of Sequences: 5004
Number of extensions: 26158
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)