Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D16
         (958 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            96   4e-20
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    95   8e-20
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    30   2.0  
At5g02840.2 68418.m00227 myb family transcription factor contain...    29   3.5  
At5g02840.1 68418.m00226 myb family transcription factor contain...    29   3.5  
At1g01520.1 68414.m00068 myb family transcription factor similar...    29   3.5  
At5g15890.1 68418.m01859 expressed protein                             29   6.0  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    28   8.0  
At1g09770.1 68414.m01096 myb family transcription factor contain...    28   8.0  

>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 95.9 bits (228), Expect = 4e-20
 Identities = 51/119 (42%), Positives = 73/119 (61%)
 Frame = +2

Query: 92  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 271
           M F R+VE GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+ L +L LT  
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58

Query: 272 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 448
            +        +++ +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++KR
Sbjct: 59  VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 50/119 (42%), Positives = 71/119 (59%)
 Frame = +2

Query: 92  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 271
           M F RYVE GRVALV  G   GKLV +VDV+DQ RALVD P   + R Q+   +L LT  
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58

Query: 272 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 448
            +        + + +A   A +  KW +S W +KL  +++RA + D+DRFK+  A++K+
Sbjct: 59  VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
            nodule inception protein [Lotus japonicus] GI:6448579;
            contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
 Frame = +2

Query: 95   PFARYVEPGRVALVADGP--LKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTK 268
            P+   + P  + L  + P      L ++ DV  + R   D  GS   R   ++N +  T+
Sbjct: 634  PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693

Query: 269  FRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWA----QKLANKE---------KRAQMTD 409
            FRL      P+R V  A  D+  + K   + WA    Q  A+           K     D
Sbjct: 694  FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWAHLTCQDTASPTILQHKLVSIKATYRED 751

Query: 410  YDRFKLTAARVKRNRARTAVFKSLKVKAA 496
              RFK++   V     +  V K LK++ A
Sbjct: 752  IIRFKISPESVSITELKQQVAKRLKLETA 780


>At5g02840.2 68418.m00227 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 293

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 APTRLVRKAWTDAKLNEKWTESQ 361
           AP + VRKA+T  K  E WTE +
Sbjct: 33  APEKKVRKAYTITKSRESWTEGE 55


>At5g02840.1 68418.m00226 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 293

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 APTRLVRKAWTDAKLNEKWTESQ 361
           AP + VRKA+T  K  E WTE +
Sbjct: 33  APEKKVRKAYTITKSRESWTEGE 55


>At1g01520.1 68414.m00068 myb family transcription factor similar to
           myb-related protein GI:2505876 from [Arabidopsis
           thaliana]
          Length = 287

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 287 FTAPTRLVRKAWTDAKLNEKWTESQ 361
           F  PT+ VRK +T  K  E WTE +
Sbjct: 44  FEDPTKKVRKPYTITKSRENWTEQE 68


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 216 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 118
           P P T  +VW+ TS   T      P   +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 110 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 262
           + PG V ++  G  KGK V  +  +     LV GP   +GVP +  R+NQ ++
Sbjct: 89  ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139


>At1g09770.1 68414.m01096 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 844

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 19/81 (23%), Positives = 37/81 (45%)
 Frame = +2

Query: 284 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 463
           AF      VRK   + +   +  ++++       E+RA+ T + + + T  + +      
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750

Query: 464 AVFKSLKVKAARAGTFGKKNI 526
             FK+LK +   A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,230,294
Number of Sequences: 28952
Number of extensions: 286403
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2304931176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)