Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D12
         (1035 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,641...    32   0.86 
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708...    29   6.0  

>06_01_0844 - 6411121-6411129,6411671-6411796,6411980-6412043,
            6412568-6412695,6412855-6412971,6414936-6415475,
            6415554-6417344,6418359-6421407,6421765-6421823,
            6422738-6422791
          Length = 1978

 Score = 31.9 bits (69), Expect = 0.86
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 597  KFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFEAQGTIXMTSYI 737
            K  + PL  + LD +TQSQ G+LL   A++L ++F+ +G    T  +
Sbjct: 1740 KNAIAPLSMYLLDPQTQSQQGRLL--AALALGDLFQNEGLARSTDAV 1784


>03_06_0238 -
           32570222-32570330,32570538-32570599,32570658-32570883,
           32571165-32571532,32571644-32571743,32571817-32571879,
           32573077-32573123,32573222-32573353
          Length = 368

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 144 DDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLS 269
           +DP  +      + L CI E+  R+SQC +   P+    P+S
Sbjct: 40  NDPSTVTSCKHEYHLQCILEWCQRSSQCPMCWQPISMKDPMS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,224,198
Number of Sequences: 37544
Number of extensions: 357010
Number of successful extensions: 850
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3047748156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)