Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D12
(1035 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9) 31 1.5
SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.5
SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11) 30 3.5
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0) 29 6.1
SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.1
>SB_39971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 31.1 bits (67), Expect = 1.5
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +3
Query: 414 LKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFT--AVFPSISDLQLSNAEVFSYV-H 584
+ LA P FK K+ V ++ YG + FT A+ P L+ NAE V
Sbjct: 326 IPLAYPGQYFKVLMKSSSAHVVKSLIKSTYGYVVFTAGAILPVEGPLKSVNAECLLMVEQ 385
Query: 585 EINPKF 602
E+NP F
Sbjct: 386 EVNPDF 391
>SB_16010| Best HMM Match : Ribosomal_L6e_N (HMM E-Value=1.9)
Length = 251
Score = 31.1 bits (67), Expect = 1.5
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 9/148 (6%)
Frame = +3
Query: 138 PADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSYYRVDIPNSNLTVEYH 317
P D K + F + F R V GP D ++ + VDI ++ T+
Sbjct: 33 PVDAKKPGQTEQKKFQIWLTNLVFRREIVSVQVGGPDSDTNAVASH-VDIDCASSTLCLS 91
Query: 318 DVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASP---------KTIFKYNRKAKEP 470
+ R D K++E Y N K V+ ++ L SP K +F+Y RK +E
Sbjct: 92 GGQMRVKDIEKVLEAYKNKGQLKHVI---LEDNPLVSPPCEVVSEGVKAVFEYLRKRQER 148
Query: 471 IVRSDALEVDYGTLTFTAVFPSISDLQL 554
+ +Y T FT PS+ + +
Sbjct: 149 RDLFEGYNKEYDTFAFTTKIPSLLHISI 176
>SB_26173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 986
Score = 29.9 bits (64), Expect = 3.5
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +3
Query: 93 LGLIASAVAFGENLDPADDPKNIKRPCPNFDLNCIREYFSRNSQCQLVRGPVPDPLPLSY 272
+G +A AVAF NLD AD+P+ P L C+ SR+ +G P L S
Sbjct: 568 IGDLAYAVAF--NLDLADNPQYYDLPVLESALECLGHVTSRSHWSTHAKGKSPMELCSSM 625
Query: 273 YR 278
R
Sbjct: 626 LR 627
>SB_57638| Best HMM Match : F5_F8_type_C (HMM E-Value=1.7e-11)
Length = 502
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 300 LTVEYHDVKTRGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPK 434
+T + V ++ + EF+ SK EK++LA + +LKL PK
Sbjct: 11 ITTNFLSVFSKTHEVEWSTEFFQRSKNEKVLLALQEDTLKLKCPK 55
>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
Length = 1055
Score = 29.1 bits (62), Expect = 6.1
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -3
Query: 565 SALLNCRSLMLGNTAVNVRVP*STSNASLLTIGSLAFLLYLKIVFGEANFKDCTSAANTS 386
S LLN + VN SN TI L FLL+ + +NF DC+ A+ +
Sbjct: 665 STLLNPSVTTFASPKVNFFTDVLLSNIVFFTICVLCFLLFNPVSLIFSNFMDCSQLADNN 724
>SB_22939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 396 AAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVD 500
A E K+A+ K + +YNRKAKE + R E +
Sbjct: 21 AKEKDPRKVAAGKKLAEYNRKAKEALAREMKREAE 55
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.7 bits (61), Expect = 8.1
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Frame = +3
Query: 237 RGPVPD-PLPLSYY--RVDIPNSNLTVEYHDVKTRGFDTIKIIEFY-INSKTEKLVLAAE 404
R P PD + LS Y R + N ++TVE V+ G ++ ++ +N K V +
Sbjct: 3799 RFPSPDLDVVLSKYAQRKPLVNGDVTVE-GQVEVMGLESKVPLKLRAMNMVPLKSVRELK 3857
Query: 405 VQSLKLASPKTIFKYNRKAKEP---IVRSDALEVDYGTLTFTAVFPSISDLQLSNAEVFS 575
+ A +++ A P + S + E+D + FP++S+ ++S + VFS
Sbjct: 3858 TERFHSAENGFSTEHSSAASSPDTQYIMSSSPEIDASSKPKNLSFPALSNREISESPVFS 3917
Query: 576 YVHEINPK 599
+ +N K
Sbjct: 3918 PLAPVNIK 3925
>SB_42361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 286
Score = 28.7 bits (61), Expect = 8.1
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -2
Query: 734 ITGHXNSSLRFKYFLKTNRDVVQQLA*LTL 645
+T H N R++ LKTN + V+Q+A LTL
Sbjct: 122 LTMHTNLMKRYQKELKTNTEQVEQIATLTL 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,520,676
Number of Sequences: 59808
Number of extensions: 400103
Number of successful extensions: 1069
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3094779573
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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