Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D10
         (1019 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    33   0.065
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   7.4  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 33.1 bits (72), Expect = 0.065
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = +1

Query: 553  PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPP 660
            P  G  PVPP S   P   P    P  P P    PP
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPP 1238



 Score = 29.9 bits (64), Expect = 0.60
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = -3

Query: 267  GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
            GAPP P       P P P  G P  P     + P  P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPP 1193



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 553  PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTP 657
            P  G  PVPP S   P   P    P  P P    P
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +1

Query: 571  PVPPKSXXXPXXXPKGPTPXAPXPXXPTPPG 663
            PVP  S   P   P  P P +  P  P P G
Sbjct: 1051 PVPKSSSGAPSAPPPVPAPSSEIPSIPAPSG 1081



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 553  PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPP 660
            P  G  PVP  +   P   P    P  P P    PP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209



 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +1

Query: 562  GXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPP 660
            G  PVP  S   P   P    P  P P    PP
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 553  PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPP 660
            P     PVP  S   P   P    P  P P    PP
Sbjct: 1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/36 (33%), Positives = 12/36 (33%)
 Frame = +1

Query: 553  PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPP 660
            P     PVP  S   P   P    P  P P    PP
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 571  PVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXK 675
            P PP +   P   P  P P  P    P+ P  G +
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = -3

Query: 261 PPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXP 166
           PP         PPPPP G     P  P P  P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 7.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 228 PPPPPRGGXPXXPXXPXPIXPXXP 157
           PPPPP    P     P P+ P  P
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAP 756


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 15/38 (39%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
 Frame = +2

Query: 158 GXXGXXGXGXXGXXGXPPR-GGGGGXXXKXKXGXGGAP 268
           G  G  G G  G  G P   GGG G       G GG P
Sbjct: 221 GGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGP 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.148    0.511 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,191
Number of Sequences: 5004
Number of extensions: 18176
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 531251476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)