Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D10
(1019 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 35 0.081
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 34 0.14
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 34 0.14
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 34 0.14
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.57
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.57
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.76
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.76
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.76
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 31 1.7
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.3
U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical pr... 30 3.0
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 4.0
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 29 5.3
U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical p... 29 5.3
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 29 5.3
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 7.0
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 29 7.0
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 7.0
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 7.0
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 7.0
AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical... 29 7.0
Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical p... 28 9.3
Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical p... 28 9.3
AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical... 28 9.3
AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical... 28 9.3
AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin ... 28 9.3
AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin ... 28 9.3
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 9.3
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 35.1 bits (77), Expect = 0.081
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
G P P F PPPPP G P P P P P
Sbjct: 102 GGIPPPPPMFGAPPPPPPPSGLGVAPQPPRPKTPVNP 138
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPP-RGGXPXXP 190
G PP P F PPPPP GG P P
Sbjct: 82 GIPPPPPMFAGGIPPPPPMMGGIPPPP 108
Score = 29.9 bits (64), Expect = 3.0
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXP 181
G P P PPPPP G P P P
Sbjct: 92 GGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
G+PP P PPPPP GG P P P P P
Sbjct: 270 GSPPPPPT---GSPPPPPAGGSPPPPRAGSPPPPPPP 303
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 562 GXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXPR 687
G PP P PKG P A P PP G PR
Sbjct: 227 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 268
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXPGT 151
G+PP P PPPPR G P P P P G+
Sbjct: 253 GSPPPPPA---AGSPPPPRTGSPPPPPTGSPPPPPAGGS 288
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXP 166
G+PP P PPPPR G P P P P
Sbjct: 278 GSPPPPPA---GGSPPPPRAGSPPPPPPPRGSPP 308
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXP 181
G+PP P PPPPPRG P P
Sbjct: 287 GSPPPPRAG-SPPPPPPPRGSPPTGSLPP 314
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 553 PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
P G P PP P G P P P PP G P
Sbjct: 232 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 275
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
G+PP P PPPPP GG P P P P P
Sbjct: 291 GSPPPPPT---GSPPPPPAGGSPPPPRAGSPPPPPPP 324
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 562 GXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXPR 687
G PP P PKG P A P PP G PR
Sbjct: 248 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 289
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXPGT 151
G+PP P PPPPR G P P P P G+
Sbjct: 274 GSPPPPPA---AGSPPPPRTGSPPPPPTGSPPPPPAGGS 309
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXP 166
G+PP P PPPPR G P P P P
Sbjct: 299 GSPPPPPA---GGSPPPPRAGSPPPPPPPRGSPP 329
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXP 181
G+PP P PPPPPRG P P
Sbjct: 308 GSPPPPRAG-SPPPPPPPRGSPPTGSLPP 335
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 553 PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
P G P PP P G P P P PP G P
Sbjct: 253 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 296
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
G+PP P PPPPP GG P P P P P
Sbjct: 276 GSPPPPPT---GSPPPPPAGGSPPPPRAGSPPPPPPP 309
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +1
Query: 562 GXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXPR 687
G PP P PKG P A P PP G PR
Sbjct: 233 GKRQAPPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPR 274
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXPGT 151
G+PP P PPPPR G P P P P G+
Sbjct: 259 GSPPPPPA---AGSPPPPRTGSPPPPPTGSPPPPPAGGS 294
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXP 166
G+PP P PPPPR G P P P P
Sbjct: 284 GSPPPPPA---GGSPPPPRAGSPPPPPPPRGSPP 314
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/29 (44%), Positives = 14/29 (48%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXP 181
G+PP P PPPPPRG P P
Sbjct: 293 GSPPPPRAG-SPPPPPPPRGSPPTGSLPP 320
Score = 28.7 bits (61), Expect = 7.0
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +1
Query: 553 PXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
P G P PP P G P P P PP G P
Sbjct: 238 PPAGSPPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPP 281
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
PP P PPPPP G P P P P P
Sbjct: 288 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 322
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +1
Query: 553 PXXGXXPVPPKSXXXPXXXPKGPTPXAP---XPXXPTPPGR 666
P P+PP P P+ P P + P P PPGR
Sbjct: 266 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR 306
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.3 bits (70), Expect = 0.57
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXPXXP 157
PP P PPPPP G P P P P P
Sbjct: 298 PPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPP 332
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Frame = +1
Query: 553 PXXGXXPVPPKSXXXPXXXPKGPTPXAP---XPXXPTPPGR 666
P P+PP P P+ P P + P P PPGR
Sbjct: 276 PPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGR 316
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.76
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -3
Query: 267 GAPPXPXX--FFXXXPPPPPRGGXPXXPXXPXPIXPXXPG 154
G PP P PPPPP GG P P P P PG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP--PPPPG 749
Score = 31.9 bits (69), Expect = 0.76
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRGGXPXXPXXPXP 175
PP P PPPPP GG P P P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 611 PKVPHPGXXPXXPQHRPAGGXKYXXGGPPP 700
P P PG P P P GG K GGPPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFK---GGPPP 786
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 228 PPPPPRGGXPXXPXXPXP 175
PPPPP GG P P P P
Sbjct: 760 PPPPPPGGCPPPPPPPPP 777
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 228 PPPPPRGGXPXXPXXPXPIXPXXPG 154
PPPPP GG P P P P PG
Sbjct: 743 PPPPPPGGLPPISGGPPP-PPPPPG 766
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
PP P PPPPP G G P P P P P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 223 PPPPGGXPPXPXXPXSXXPXXXG 155
PPPPGG PP P P G
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGG 767
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.76
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -3
Query: 267 GAPPXPXX--FFXXXPPPPPRGGXPXXPXXPXPIXPXXPG 154
G PP P PPPPP GG P P P P PG
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP--PPPPG 749
Score = 31.9 bits (69), Expect = 0.76
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRGGXPXXPXXPXP 175
PP P PPPPP GG P P P
Sbjct: 761 PPPPPGGCPPPPPPPPPGGFKGGPPPPPP 789
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 611 PKVPHPGXXPXXPQHRPAGGXKYXXGGPPP 700
P P PG P P P GG K GGPPP
Sbjct: 760 PPPPPPGGCPPPPPPPPPGGFK---GGPPP 786
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 228 PPPPPRGGXPXXPXXPXP 175
PPPPP GG P P P P
Sbjct: 760 PPPPPPGGCPPPPPPPPP 777
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 228 PPPPPRGGXPXXPXXPXPIXPXXPG 154
PPPPP GG P P P P PG
Sbjct: 743 PPPPPPGGLPPISGGPPP-PPPPPG 766
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
PP P PPPPP G G P P P P P
Sbjct: 762 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 223 PPPPGGXPPXPXXPXSXXPXXXG 155
PPPPGG PP P P G
Sbjct: 745 PPPPGGLPPISGGPPPPPPPPGG 767
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.76
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Frame = -3
Query: 267 GAPPXPXX--FFXXXPPPPPRGGXPXXPXXPXPIXPXXPG 154
G PP P PPPPP GG P P P P PG
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPITGGPPP--PPPPG 332
Score = 31.9 bits (69), Expect = 0.76
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRGGXPXXPXXPXP 175
PP P PPPPP GG P P P
Sbjct: 344 PPPPPGGCPPPPPPPPPGGFKGGPPPPPP 372
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +2
Query: 611 PKVPHPGXXPXXPQHRPAGGXKYXXGGPPP 700
P P PG P P P GG K GGPPP
Sbjct: 343 PPPPPPGGCPPPPPPPPPGGFK---GGPPP 369
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 228 PPPPPRGGXPXXPXXPXP 175
PPPPP GG P P P P
Sbjct: 343 PPPPPPGGCPPPPPPPPP 360
Score = 30.3 bits (65), Expect = 2.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 228 PPPPPRGGXPXXPXXPXPIXPXXPG 154
PPPPP GG P P P P PG
Sbjct: 326 PPPPPPGGLPPISGGPPP-PPPPPG 349
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Frame = -3
Query: 261 PPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
PP P PPPPP G G P P P P P
Sbjct: 345 PPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -2
Query: 223 PPPPGGXPPXPXXPXSXXPXXXG 155
PPPPGG PP P P G
Sbjct: 328 PPPPGGLPPISGGPPPPPPPPGG 350
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 30.7 bits (66), Expect = 1.7
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Frame = +2
Query: 158 GXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGGAPXXXKAXEKCWHQXKXXXXGVXRT 337
G G G G G G PRGGGGG + G +P + ++ R+
Sbjct: 10 GGGGFRG-GRGGGSGFTPRGGGGGFRGGDR---GRSPGGFRGGDRGRSSSGFRGGDRGRS 65
Query: 338 PXRCRGXR-----XRGXGGRFLG 391
P RG R RG GG F G
Sbjct: 66 PGGFRGDREGGFSPRGRGGGFRG 88
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXPXXPXXPXPIXP 166
G PP P PPPPP P P P PI P
Sbjct: 26 GPPPCP-------PPPPPMCAPPPLPCPPPPICP 52
>U53153-1|AAC69039.4| 715|Caenorhabditis elegans Hypothetical
protein T19A5.3a protein.
Length = 715
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = -1
Query: 659 GGVGXXGXGAXGVGPLGXXXGFXXLFGGTGXXPXXGP 549
GG G G G G G G G FGG P GP
Sbjct: 484 GGGGGFGGGGGGFGGGGGGFGSGSPFGGAAPSPPSGP 520
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +1
Query: 550 GPXXGXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPPG 663
GP P P P GP+P P P P+P G
Sbjct: 984 GPSDPNKPSPNGPSDPVKPSPSGPSPNGPSPNGPSPNG 1021
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
protein R08B4.1b protein.
Length = 1160
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 158 GXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGGA 265
G G G G G G GGGGG G GG+
Sbjct: 781 GPTGSSGGGGGGGNGGSGGGGGGGGGGSGGSGGGGS 816
>U23172-13|ABH03527.1| 282|Caenorhabditis elegans Hypothetical
protein F25B5.7c protein.
Length = 282
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 155 PGXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGG 262
PG G G G G PP GG G + G GG
Sbjct: 175 PGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGG 210
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 155 PGXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGG 262
PG G G G G PP G GG G GG
Sbjct: 184 PGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPGG 219
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 29.1 bits (62), Expect = 5.3
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 155 PGXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGG 262
PG G G G G PP GG G + G GG
Sbjct: 455 PGHGGMGGPPGHGGQGGPPGHGGMGGPPPGQGGPGG 490
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 155 PGXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGG 262
PG G G G G PP G GG G GG
Sbjct: 464 PGHGGQGGPPGHGGMGGPPPGQGGPGGPGGPGGPGG 499
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
G PP P PP P G G P P P P P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 PGXXGXXGX-GXXGXXGXPPRGGGGGXXXKXKXGXGGAP 268
PG G G G G G P GG G K G GAP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 PGXXGXXGXGXXGXXGXP-PRGGGGGXXXKXKXGXGGAP 268
PG G G G G G P P G GG G GAP
Sbjct: 206 PGKDGEKGKGEPGPAGPPGPPGPGGPPGDAGGAGSDGAP 244
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
G PP P PP P G G P P P P P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 PGXXGXXGX-GXXGXXGXPPRGGGGGXXXKXKXGXGGAP 268
PG G G G G G P GG G K G GAP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
G PP P PP P G G P P P P P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 PGXXGXXGX-GXXGXXGXPPRGGGGGXXXKXKXGXGGAP 268
PG G G G G G P GG G K G GAP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRG--GXPXXPXXPXPIXPXXP 157
G PP P PP P G G P P P P P P
Sbjct: 152 GGPPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGP 190
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +2
Query: 155 PGXXGXXGX-GXXGXXGXPPRGGGGGXXXKXKXGXGGAP 268
PG G G G G G P GG G K G GAP
Sbjct: 220 PGPAGPPGPAGPAGNDGAPGTGGPGPAGPKGPPGAAGAP 258
>AL032637-18|CAE17998.1| 193|Caenorhabditis elegans Hypothetical
protein Y43F8C.20 protein.
Length = 193
Score = 28.7 bits (61), Expect = 7.0
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = +2
Query: 158 GXXGXXGXGXXGXXGXPPRGGGGGXXXKXKXGXGGA 265
G G G G G G RGGGGG + G GGA
Sbjct: 147 GPPGSNGGGDWGGNGGGGRGGGGG---RGGGGGGGA 179
>Z82274-16|CAC70096.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 577 PPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
PP++ P+P P P PP RG + P
Sbjct: 1058 PPQACLFNPFTQSAPSPAPPPSTIPLPPTRGASVGP 1093
>Z82274-15|CAB05234.2| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 577 PPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
PP++ P+P P P PP RG + P
Sbjct: 1052 PPQACLFNPFTQSAPSPAPPPSTIPLPPTRGASVGP 1087
>AL132951-13|CAC70127.1| 1119|Caenorhabditis elegans Hypothetical
protein JC8.10b protein.
Length = 1119
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 577 PPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
PP++ P+P P P PP RG + P
Sbjct: 1058 PPQACLFNPFTQSAPSPAPPPSTIPLPPTRGASVGP 1093
>AL132951-12|CAC44311.1| 1113|Caenorhabditis elegans Hypothetical
protein JC8.10a protein.
Length = 1113
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 577 PPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
PP++ P+P P P PP RG + P
Sbjct: 1052 PPQACLFNPFTQSAPSPAPPPSTIPLPPTRGASVGP 1087
>AF283323-1|AAG18575.1| 1113|Caenorhabditis elegans synaptojanin
UNC-26B protein.
Length = 1113
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 577 PPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
PP++ P+P P P PP RG + P
Sbjct: 1052 PPQACLFNPFTQSAPSPAPPPSTIPLPPTRGASVGP 1087
>AF283322-1|AAG18574.1| 1119|Caenorhabditis elegans synaptojanin
UNC-26A protein.
Length = 1119
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +1
Query: 577 PPKSXXXPXXXPKGPTPXAPXPXXPTPPGRGXKIXP 684
PP++ P+P P P PP RG + P
Sbjct: 1058 PPQACLFNPFTQSAPSPAPPPSTIPLPPTRGASVGP 1093
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 9.3
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +1
Query: 562 GXXPVPPKSXXXPXXXPKGPTPXAPXPXXPTPP 660
G P PP P PTP AP P P PP
Sbjct: 120 GGVPAPPN---PPRTCCPPPTPAAPPPPPPPPP 149
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 267 GAPPXPXXFFXXXPPPPPRGGXP 199
G P F PPPPP GG P
Sbjct: 52 GFRPQQGQFMPQYPPPPPMGGMP 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.148 0.511
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,269
Number of Sequences: 27780
Number of extensions: 231501
Number of successful extensions: 1893
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2688795166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -