Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D09
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16260.1 68414.m01947 protein kinase family protein contains ...    30   2.4  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.4  
At3g13450.1 68416.m01692 2-oxoisovalerate dehydrogenase / 3-meth...    28   9.5  
At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha ch...    28   9.5  

>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +3

Query: 264 RSSGLWERATKDFLVKVVT-TGXFFNDDRGKLTGQAYGTRVLGPGGDSTSYGGRLD 428
           R+ GL  +    FL   V  T  F ++D    T +   +R+LG GG  T Y G L+
Sbjct: 355 RNGGLLLQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +3

Query: 336 NDDRGKLTG--QAYGTRVLGPGGDSTSYGGR 422
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g13450.1 68416.m01692 2-oxoisovalerate dehydrogenase /
           3-methyl-2-oxobutanoate dehydrogenase / branched-chain
           alpha-keto acid dehydrogenase E1 beta subunit (DIN4)
           identical to branched chain alpha-keto acid
           dehydrogenase E1 beta subunit [Arabidopsis thaliana]
           GI:7021286
          Length = 358

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -3

Query: 343 SSLKNXPVVTTFTKKSLVALSQSPEDLPSPHXPCPK*QSREYREGVGLTLKIGW*SDTSL 164
           SS+++   V  F  K L    Q+ ED+P      P  ++   REG  +TL +GW +  ++
Sbjct: 194 SSIRDPNPVVFFEPKWLYR--QAVEDVPEDDYMIPLSEAEVMREGSDITL-VGWGAQLTI 250

Query: 163 RNQ 155
             Q
Sbjct: 251 MEQ 253


>At1g03090.2 68414.m00284 methylcrotonyl-CoA carboxylase alpha
           chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase
           1 (MCCA) nearly identical to SP|Q42523
           Methylcrotonyl-CoA carboxylase alpha chain,
           mitochondrial precursor (EC 6.4.1.4)
           (3-Methylcrotonyl-CoA carboxylase 1) (MCCase alpha
           subunit) (3-methylcrotonyl-CoA:carbon dioxide ligase
           alpha subunit) {Arabidopsis thaliana}
          Length = 734

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 180 HQPIFKVSPTPSRYSRL-CHLGQGKWGEGRSSGLWERATKDFLVKVVTTGXFFNDDRGKL 356
           HQ I + +P P+   +   +LGQ      R+ G +   T +F+V   +   +F +   +L
Sbjct: 271 HQKIIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTRL 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,786,066
Number of Sequences: 28952
Number of extensions: 310341
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)