Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D06
         (945 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26710.2 68417.m03850 ATP synthase subunit H family protein c...    56   5e-08
At4g26710.1 68417.m03849 ATP synthase subunit H family protein c...    56   5e-08
At5g55290.1 68418.m06890 ATP synthase subunit H family protein c...    55   6e-08
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    29   3.4  
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    29   4.5  
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    29   5.9  
At1g74055.1 68414.m08577 expressed protein                             29   5.9  
At3g07770.1 68416.m00947 heat shock protein-related strong simil...    28   7.8  

>At4g26710.2 68417.m03850 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +1

Query: 160 VFSILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGP 324
           V S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P
Sbjct: 5   VTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVP 64

Query: 325 RLS 333
            LS
Sbjct: 65  ILS 67


>At4g26710.1 68417.m03849 ATP synthase subunit H family protein
           contains similarity to Swiss-Prot:O15342 Vacuolar ATP
           synthase subunit H (V-ATPase H subunit) (Vacuolar proton
           pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase 9.2
           kDa membrane accessory protein) [Homo sapiens]
          Length = 70

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
 Frame = +1

Query: 160 VFSILWGVVGIICPIFAP----KGPNRGIIQVVLILTAATC-WLFWLCAYMAQMNPLIGP 324
           V S+++ VVGII  I       KGP+  ++ + L++TA  C W+ W   Y+AQMNPLI P
Sbjct: 5   VTSLIFAVVGIIASICTRICFNKGPSTNLLHLTLVITATVCCWMMWAIVYIAQMNPLIVP 64

Query: 325 RLS 333
            LS
Sbjct: 65  ILS 67


>At5g55290.1 68418.m06890 ATP synthase subunit H family protein
           contains weak similarity to Vacuolar ATP synthase
           subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar
           proton pump H subunit) (V-ATPase M9.2 subunit) (V-ATPase
           9.2 kDa membrane accessory protein) (Swiss-Prot:P81103)
           [Bos taurus]; contains Pfam profile PF05493: ATP
           synthase subunit H
          Length = 70

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 27/69 (39%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = +1

Query: 133 MGYSLIPIFVFSILWGVVGIICP-IFAPKGPNRGIIQVVLILTAATC-WLFWLCAYMAQM 306
           MG+ LI   +F ++ G++  +C  I   +GP+  ++ + L++TA  C W+ W   Y+AQM
Sbjct: 1   MGF-LITTLIFVVV-GIIASLCVRICCNRGPSTNLLHLTLVITATVCCWMMWAIVYIAQM 58

Query: 307 NPLIGPRLS 333
           NPLI P LS
Sbjct: 59  NPLIVPILS 67


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 121 YHLK--MGYSLIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAY 294
           YH K  + Y L+ IF  ++ + V G+ C   + K     +I   +++ + T + FW    
Sbjct: 88  YHQKHPVNYLLLGIFTVALAFAV-GLTCAFTSGKVILESVILTAVVVISLTLYTFWAAKR 146

Query: 295 MAQMNPLIGPRLSNETLI 348
               N  +GP L    ++
Sbjct: 147 GHDFN-FLGPFLFGAVIV 163


>At4g20160.1 68417.m02949 expressed protein ; expression supported
           by MPSS
          Length = 1188

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 213 RCEDGANNTNHTPKDGENED--RDKGVAHFEMIIRYFF*FRLSQTNISCPKMVD 58
           RC    NNTN+  K   N +  R+  VA FE  +  F    L   ++S   +VD
Sbjct: 24  RCTQRDNNTNNNKKKNNNNNNVRNIHVAAFEKNLNVFVRDHLENCSVSVDDVVD 77


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 121 YHLK--MGYSLIPIFVFSILWGVVGIICPIFAPKGPNRGIIQVVLILTAATCWLFWLCAY 294
           YH K  + Y L+ IF  ++ + VVG+ C     K     +I   +++ + T + FW    
Sbjct: 97  YHQKHPVNYLLLGIFTLALAF-VVGLTCAFTNGKVILESVILTSVVVLSLTLYTFWAARK 155

Query: 295 MAQMNPLIGPRL 330
               N  +GP L
Sbjct: 156 GYDFN-FLGPFL 166


>At1g74055.1 68414.m08577 expressed protein
          Length = 144

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +1

Query: 217 GPNRGIIQVVLILTAATCWLFWLCA-------YMAQMNPLIGPRLSNETLIWISRTW 366
           GP   +I V++IL   +C+L   CA        +A++NPL   + S   L W+ R W
Sbjct: 53  GPFFAVISVLIILAVLSCFLGRFCARSRQRTGLVAEVNPLEMIK-SGGLLGWLRRKW 108


>At3g07770.1 68416.m00947 heat shock protein-related strong
           similarity to heat-shock protein [Secale cereale]
           GI:556673; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 803

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 337 ETLIWISRTWGNKINNTQA*SSDLKSPC---RGLVGWFKNVTMIVKS 468
           +T  WI +  G+K+ + Q  +    SPC    G  GW  N+  ++K+
Sbjct: 638 QTCDWIKKRLGDKVASVQISNRLSSSPCVLVSGKFGWSANMERLMKA 684


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,971,110
Number of Sequences: 28952
Number of extensions: 348200
Number of successful extensions: 706
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2266029384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)