Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D03
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   3.6  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   4.7  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.2  

>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = +3

Query: 483 REKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIRRPPT 662
           R  L AA  +  +  ++L K+    V + +E  +P  KA   D+  ++ E      +PP+
Sbjct: 174 RNTLYAAKASIQKRYERLTKR---GVDQAHES-SPVKKAKLDDYPTSSNEETISSVKPPS 229

Query: 663 PSSERRY 683
           P+S+ ++
Sbjct: 230 PNSDSKF 236


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 433 LGRALDVLPRLFQSLLGLAVRVSERXPGDSW 341
           +G  +  L RLF SL GL    ++  PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 410 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 288
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,197,472
Number of Sequences: 5004
Number of extensions: 31678
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)