Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D03
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    32   0.70 
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    31   1.6  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    29   6.6  
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104...    28   8.7  
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989...    28   8.7  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   8.7  

>05_03_0415 -
           13661745-13664240,13664376-13664401,13665018-13665035,
           13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -2

Query: 428 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 270
           P  R SA T+    WP    L A+ +R L  AL+CC + S PS    L++C S
Sbjct: 99  PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 483 REKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIR-RPP 659
           RE +   +Q  ++E+++ +K     V+E   +LA + KAA  D  ++T+  +  +R RPP
Sbjct: 564 RENVIKTLQEKIREAEQTSKTYQQRVRELENELANEKKAA-RDTARSTKPPLAPMRQRPP 622


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +3

Query: 486 EKLQAAVQNTVQESQKLAKKVSSNVQETN 572
           EKLQ  + +  QE+Q+L KK+SS ++ ++
Sbjct: 153 EKLQKEISSLSQENQELKKKISSVLENSD 181


>02_04_0013 -
           18910009-18910056,18910154-18910282,18910373-18910420,
           18910532-18910594,18910675-18910713,18912107-18912180,
           18913014-18913072,18913265-18913324,18913466-18913590,
           18914054-18914112,18914356-18914419,18914516-18914569,
           18914727-18914765,18916135-18916275
          Length = 333

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/67 (22%), Positives = 33/67 (49%)
 Frame = +3

Query: 483 REKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIRRPPT 662
           REK++  ++  V+E ++  K+     ++  + + PKIK A+ +        +K +  P  
Sbjct: 255 REKMKEFLKEKVRERKRELKQAKEARKKAIDDMDPKIKEAFENIQFYKFYPVKTLDTPDV 314

Query: 663 PSSERRY 683
            + + RY
Sbjct: 315 SNVKARY 321


>01_06_0124 -
           26692731-26697046,26698749-26698827,26698899-26698955,
           26699321-26699416
          Length = 1515

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = +3

Query: 462 EKNATXLR-EKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKA 599
           EKNA  L+ ++L+A ++N   E ++   +VS+ +++ NE+L  KI +
Sbjct: 832 EKNAALLQVQQLEANLKNLESELEQKQSQVSA-LEQANEELREKISS 877


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -2

Query: 446 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 324
           PC  P P  R  ++T  + PW    R R + W  L     C
Sbjct: 26  PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,692
Number of Sequences: 37544
Number of extensions: 256858
Number of successful extensions: 1035
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)