Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D03
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.41 
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      31   1.2  
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)                        31   1.2  
SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)                29   5.0  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  29   6.6  
SB_25422| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_52883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +3

Query: 507  QNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIRRPPTPSSE 674
            Q T+QE Q+  + ++  VQET +     +K +     K T E  + +  PP  +++
Sbjct: 1127 QATLQEPQRQEESLTKQVQETQQSQGQPVKQSEETAPKQTDEEQQSLENPPQKNTK 1182


>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 440 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQA 291
           G   PC+RC   + P    P   R +   WR LA ALS  +T     + A
Sbjct: 95  GQNNPCSRCGLLSCPTTTSP-EKRRKTPSWRTLAPALSPSATQPAACYDA 143


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 480 LREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIRRPP 659
           L+E+ ++  +  +Q+ +K  K+ S   Q+T    APK K A       TQ    KI  PP
Sbjct: 340 LKEEYKSLQRQAMQDLKKQLKQTSEAQQQTETNSAPKAKPAKPSVPSPTQTAPNKI--PP 397


>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 2590

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 462 EKNATXLREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQ 629
           EKN   L E   +A+QNT+Q          + + E     A KI+A   +  K T+
Sbjct: 272 EKNGIFLSEDSYSAMQNTIQSQTSRITHFETRLPEMEADFAAKIEAMEAELQKVTE 327


>SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 428 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALL 285
           P +RC   + P    P + R + L WR LA ALS  +T  +    A L
Sbjct: 54  PWSRCGLLSCPTTTSPAKRR-KTLSWRTLAPALSPSATQPDACCDAAL 100


>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
          Length = 337

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = -2

Query: 440 GAPRPCARCSASTVPKPPWPCR-----SRLRALPWRLLAKALSCCSTDSEPS 300
           G P P   C    +P PP  C+     S L A  +  +  +L  C +D  PS
Sbjct: 123 GIPSPLVACKFDDIPSPPVACKFDDIPSTLVACEFDGIPSSLVTCESDGIPS 174



 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/67 (31%), Positives = 28/67 (41%)
 Frame = -2

Query: 440 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDL 261
           G P P     +  +P PP  C+S    +P  L+A     C  D  PS    L +C S  +
Sbjct: 183 GIPSPLVAYGSDGIPSPPVACKS--DGIPSTLVA-----CKFDGIPS---SLVACKSDGI 232

Query: 260 VSELNCC 240
            S L  C
Sbjct: 233 TSSLAAC 239


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = +2

Query: 80  SSALSLSTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP*DFXNNSLTRS 259
           S + S S  H   + RS  R     P+   + RRSR  Q  R+P +       +     S
Sbjct: 214 SRSRSRSRSHRKSRKRSESRSRSRSPKKSRSARRSRSPQKSRSPQRSRS-PRSSKRYRSS 272

Query: 260 PSQRTHRTSAR 292
            S R HR+ +R
Sbjct: 273 RSHRKHRSHSR 283


>SB_25422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 258

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 465 KNATXLREKLQAAVQNTVQ--ESQKLAKKVSSNVQETNEKLAPK 590
           K    LRE LQA+V+ +++  E +K AKK +   +  +E  +PK
Sbjct: 149 KEEQNLRESLQASVEESLESHEQEKKAKKKNKQPKIKHEPESPK 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,692,689
Number of Sequences: 59808
Number of extensions: 280556
Number of successful extensions: 895
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)