Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D03
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    31   1.0  
At2g48160.1 68415.m06031 PWWP domain-containing protein                30   2.3  
At2g32160.2 68415.m03931 expressed protein                             28   7.2  
At2g32160.1 68415.m03930 expressed protein                             28   7.2  
At4g28020.1 68417.m04019 expressed protein contains Pfam PF01980...    28   9.5  

>At5g48600.1 68418.m06011 structural maintenance of chromosomes (SMC)
            family protein similar to SP|P50532 Chromosome assembly
            protein XCAP-C {Xenopus laevis}; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +3

Query: 456  NVEKNATXLREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEV 635
            N+EK +  L++KLQ  ++N   E  K  K     +Q   +K   +I         N Q++
Sbjct: 817  NLEKGSKQLKDKLQTNIENAGGEKLKGQKAKVEKIQTDIDKNNTEINRCNVQIETN-QKL 875

Query: 636  IKKIRR 653
            IKK+ +
Sbjct: 876  IKKLTK 881


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 68   PVRISSALSLSTVHH-GRQVR--SSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 226
            P+R++  LS ST+H+ G +    S ++L  S P++DG+  + R    H  PH   P
Sbjct: 1184 PLRMNPPLSGSTMHYQGPESSYISGVQLTNSIPQADGSNFQHRPYPSHPHPHPPPP 1239


>At2g32160.2 68415.m03931 expressed protein
          Length = 449

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 522 ESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIRR 653
           + +K+++K +   +    K  P I +AY ++ K  +E +KK  R
Sbjct: 34  DEEKISRKKNPEEEALEAKCLPGIISAYLNYPKAAEENLKKCER 77


>At2g32160.1 68415.m03930 expressed protein
          Length = 415

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 522 ESQKLAKKVSSNVQETNEKLAPKIKAAYXDFXKNTQEVIKKIRR 653
           + +K+++K +   +    K  P I +AY ++ K  +E +KK  R
Sbjct: 34  DEEKISRKKNPEEEALEAKCLPGIISAYLNYPKAAEENLKKCER 77


>At4g28020.1 68417.m04019 expressed protein contains Pfam PF01980:
           Uncharacterised protein family
          Length = 351

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 195 KDIEHHTKEFHKTLXTTV-*LAHQVKGRTGLQQGLEGRL 308
           +D+E+  KEF K+L +T+   A + KGR   QQ L   L
Sbjct: 38  EDLENRIKEFEKSLGSTLEKSASERKGRVKAQQALREAL 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,519
Number of Sequences: 28952
Number of extensions: 186150
Number of successful extensions: 661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)