Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D01
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    40   5e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    39   8e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||...    39   0.001
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr...    38   0.002
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    36   0.010
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||...    34   0.023
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    32   0.094
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    32   0.094

>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 39.9 bits (89), Expect = 5e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           +DF ++ +  D   I +LQ+WD AG ERF  +T  YY+
Sbjct: 44  IDFKIRTIELDGKRI-KLQIWDTAGQERFRTITTAYYR 80


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 39.1 bits (87), Expect = 8e-04
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           VDF ++    +  T+ +LQ+WD AG ERF  +T  YY+
Sbjct: 43  VDFKIRTFELEGKTV-KLQIWDTAGQERFRTITSSYYR 79


>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +3

Query: 546 FALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           F  + L  D NT ++L++WD AG ER+ ++  +YY+
Sbjct: 51  FLTQTLPIDENTSVKLEIWDTAGQERYKSLAPMYYR 86


>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +3

Query: 516 NTIEQPSXVDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           NT +    +DF  K +  +  T+ RLQLWD AG ERF ++   Y +
Sbjct: 38  NTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQERFRSLIPSYIR 82



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 451 IGELGTGKTSIIKRYVHQFFXST 519
           +GE   GKTS+I R+++  F +T
Sbjct: 17  LGEQSVGKTSLITRFMYDQFDNT 39


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +3

Query: 540 VDFALKVLN---WDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           +DFA ++++    +    I+LQ+WD AG E+F ++ R YY+
Sbjct: 44  IDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYR 84


>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 214

 Score = 34.3 bits (75), Expect = 0.023
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           V+FA + +  D N  I+ Q+WD AG ER+  +T  YY+
Sbjct: 45  VEFATRNIVLD-NKKIKAQIWDTAGQERYRAITSAYYR 81


>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 543 DFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           DF  K +  D   ++ LQLWD AG ERF ++   +Y+
Sbjct: 44  DFLTKEVLVDDK-VVTLQLWDTAGQERFQSLGVAFYR 79



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 451 IGELGTGKTSIIKRYVHQFF 510
           +GE G GKTSI+ +YV++ F
Sbjct: 14  LGESGVGKTSIMNQYVNRKF 33


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 32.3 bits (70), Expect = 0.094
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 543 DFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
           DF  K +  D   ++ LQLWD AG ERF ++   +Y+
Sbjct: 44  DFLTKDVVVDDK-LVTLQLWDTAGQERFQSLGMAFYR 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,864,037
Number of Sequences: 5004
Number of extensions: 54500
Number of successful extensions: 150
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)