Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP01_F_D01
(885 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 62 7e-10
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 62 7e-10
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 42 4e-04
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 42 6e-04
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 40 0.002
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 40 0.002
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 40 0.002
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 40 0.002
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 40 0.002
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 39 0.004
Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical pr... 38 0.007
Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.007
AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical ... 38 0.007
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 38 0.010
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 38 0.010
Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical pr... 38 0.013
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 38 0.013
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 38 0.013
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 37 0.017
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 36 0.039
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 36 0.039
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 36 0.039
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 36 0.039
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 36 0.039
AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family pr... 36 0.051
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 36 0.051
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 35 0.067
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 35 0.067
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 35 0.067
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 35 0.067
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 35 0.067
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 34 0.12
U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical pr... 34 0.16
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 33 0.21
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 33 0.27
AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical ... 31 0.83
AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein. 31 0.83
Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z35663-2|CAA84735.2| 335|Caenorhabditis elegans Hypothetical pr... 29 5.8
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 61.7 bits (143), Expect = 7e-10
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDFALK+L D NT++ LQ+WDI+G +R+G MTRVYYK
Sbjct: 46 VDFALKILPVDENTVVHLQIWDISGQDRYGVMTRVYYK 83
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 418 NAGSIYIRSSXIGELGTGKTSIIKRYVHQFFXS 516
N I + IG+ G GKTSII+R+VH F S
Sbjct: 6 NNDKISYKVLVIGDPGVGKTSIIRRFVHNVFSS 38
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 61.7 bits (143), Expect = 7e-10
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDFALK+L D NT++ LQ+WDI+G +R+G MTRVYYK
Sbjct: 46 VDFALKILPVDENTVVHLQIWDISGQDRYGVMTRVYYK 83
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 418 NAGSIYIRSSXIGELGTGKTSIIKRYVHQFFXS 516
N I + IG+ G GKTSII+R+VH F S
Sbjct: 6 NNDKISYKVLVIGDPGVGKTSIIRRFVHNVFSS 38
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF +K + N I +QLWD AG ERF ++T+ Y++
Sbjct: 237 VDFTVKTMKIPPNRAIAMQLWDTAGQERFRSITKQYFR 274
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 41.9 bits (94), Expect = 6e-04
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF ++ + D TI +LQ+WD AG ERF +T YY+
Sbjct: 46 VDFKIRTIELDGKTI-KLQIWDTAGQERFRTITSSYYR 82
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF ++ + D I +LQ+WD AG ERF +T YY+
Sbjct: 43 IDFKIRTIELDGKKI-KLQIWDTAGQERFRTITTAYYR 79
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/46 (39%), Positives = 27/46 (58%)
Frame = +3
Query: 516 NTIEQPSXVDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
N + VDF +K +N D + LQLWD AG ERF ++ + Y++
Sbjct: 488 NQLPSTLGVDFHVKTVNVDGRNVA-LQLWDTAGQERFRSLCKSYFR 532
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF +K + N I+LQ+WD AG ERF ++T+ YY+
Sbjct: 42 VDFMIKTVKV-GNDKIKLQIWDTAGQERFRSITQSYYR 78
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF ++ + D I +LQ+WD AG ERF +T YY+
Sbjct: 43 IDFKIRTIELDGKKI-KLQIWDTAGQERFRTITTAYYR 79
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF ++ + D I +LQ+WD AG ERF +T YY+
Sbjct: 43 IDFKIRTIELDGKKI-KLQIWDTAGQERFRTITTAYYR 79
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 39.1 bits (87), Expect = 0.004
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF +K L D + +LQ+WD G ERF +T+ YY+
Sbjct: 45 VDFTMKTLVVDGKRV-KLQIWDTGGQERFRTITQSYYR 81
>Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical
protein D2013.1 protein.
Length = 229
Score = 38.3 bits (85), Expect = 0.007
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF +++ ++LQLWD AG E+F ++T+ YY+
Sbjct: 52 VDFYARMIELRPGYRVKLQLWDTAGQEKFRSITKSYYR 89
>Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical
protein F59B2.7 protein.
Length = 205
Score = 38.3 bits (85), Expect = 0.007
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +3
Query: 516 NTIEQPSXVDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
NT + +DF K + + TI RLQLWD AG ERF ++ Y +
Sbjct: 38 NTYQATIGIDFLSKTMYLEDRTI-RLQLWDTAGQERFRSLIPSYIR 82
>AC024859-6|AAK29982.1| 195|Caenorhabditis elegans Hypothetical
protein Y71H2AM.12 protein.
Length = 195
Score = 38.3 bits (85), Expect = 0.007
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF K++ + IRLQLWD AG ERF + Y +
Sbjct: 41 IDFKHKIVQLNDGQSIRLQLWDTAGQERFRQLAPAYIR 78
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 37.9 bits (84), Expect = 0.010
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +3
Query: 516 NTIEQPSXVDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
NT + +DF K + + T+ RLQLWD AG ERF ++ Y +
Sbjct: 37 NTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQERFRSLIPSYIR 81
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 37.9 bits (84), Expect = 0.010
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF ++ ++ + + +LQ+WD AG ERF +T YY+
Sbjct: 45 VDFKIRTMDINGQRV-KLQIWDTAGQERFRTITSTYYR 81
>Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical
protein K09A9.2 protein.
Length = 210
Score = 37.5 bits (83), Expect = 0.013
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
V+F +++ S I+LQ+WD AG ERF +TR YY+
Sbjct: 46 VEFGTRIIEV-SGQKIKLQIWDTAGQERFRAVTRSYYR 82
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + I +LQ+WD AG ERF +T YY+
Sbjct: 44 IDFKIKTIELKGKKI-KLQIWDTAGQERFHTITTSYYR 80
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 37.5 bits (83), Expect = 0.013
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + I +LQ+WD AG ERF +T YY+
Sbjct: 44 IDFKIKTIELKGKKI-KLQIWDTAGQERFHTITTSYYR 80
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 37.1 bits (82), Expect = 0.017
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
V+F +++ D I +LQ+WD AG E F ++TR YY+
Sbjct: 41 VEFGARMVTIDGKQI-KLQIWDTAGQESFRSITRSYYR 77
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 35.9 bits (79), Expect = 0.039
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + + + ++LQ+WD AG ER+ +T YY+
Sbjct: 57 IDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYR 93
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 35.9 bits (79), Expect = 0.039
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + + + ++LQ+WD AG ER+ +T YY+
Sbjct: 57 IDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYR 93
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 35.9 bits (79), Expect = 0.039
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + + + ++LQ+WD AG ER+ +T YY+
Sbjct: 57 IDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYR 93
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 35.9 bits (79), Expect = 0.039
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + + + ++LQ+WD AG ER+ +T YY+
Sbjct: 71 IDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYR 107
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 35.9 bits (79), Expect = 0.039
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+DF +K + + + ++LQ+WD AG ER+ +T YY+
Sbjct: 57 IDFKVKTV-FRGDKRVKLQIWDTAGQERYRTITTAYYR 93
>AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family
protein 18, isoform a protein.
Length = 193
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF + + D N + +L +WD AG ERF +T YY+
Sbjct: 19 VDFRVTSMAIDGNRV-KLAIWDTAGQERFRTLTPSYYR 55
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 35.5 bits (78), Expect = 0.051
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
VDF + + D N + +L +WD AG ERF +T YY+
Sbjct: 46 VDFRVTSMAIDGNRV-KLAIWDTAGQERFRTLTPSYYR 82
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 35.1 bits (77), Expect = 0.067
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
V+FA + ++ + T+ + Q+WD AG ER+ +T YY+
Sbjct: 46 VEFATRSISVEGKTV-KAQIWDTAGQERYRAITSAYYR 82
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 35.1 bits (77), Expect = 0.067
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYY 650
VDF LK + + I RL+LWD AG ER+ + YY
Sbjct: 41 VDFKLKTIKLGRDKI-RLELWDTAGMERYRTIYNSYY 76
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 35.1 bits (77), Expect = 0.067
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
V+FA + ++ + T+ + Q+WD AG ER+ +T YY+
Sbjct: 46 VEFATRSISVEGKTV-KAQIWDTAGQERYRAITSAYYR 82
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 35.1 bits (77), Expect = 0.067
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+D+ K++ + +LQ+WD AG ERF ++T YY+
Sbjct: 38 IDYRNKLITMGDKKV-KLQIWDTAGQERFRSVTTSYYR 74
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 35.1 bits (77), Expect = 0.067
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
+D+ K++ + +LQ+WD AG ERF ++T YY+
Sbjct: 38 IDYRNKLITMGDKKV-KLQIWDTAGQERFRSVTTSYYR 74
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 543 DFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
DF + +N D T+ LQ+WD AG ERF ++ +Y+
Sbjct: 45 DFLTRDVNIDDRTVT-LQIWDTAGQERFQSLGVAFYR 80
>U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical
protein C56E6.2 protein.
Length = 266
Score = 33.9 bits (74), Expect = 0.16
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 534 SXVDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
S V F + D ++RLQ+WD AG ERF M +Y +
Sbjct: 88 SFVSFDVGADYRDREDVVRLQVWDTAGQERFRCMVPMYMR 127
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 33.5 bits (73), Expect = 0.21
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
V+FA K+++ + + ++Q+WD AG ERF YY+
Sbjct: 43 VEFATKIISVEGKAV-KVQIWDTAGMERFRCGASSYYR 79
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 33.1 bits (72), Expect = 0.27
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
V+F K L D + RL++WD G E F ++ R YY+
Sbjct: 41 VEFGYKDLQIDKYKV-RLRVWDTCGQENFRSIIRAYYR 77
>AL110500-4|CAB54484.1| 215|Caenorhabditis elegans Hypothetical
protein Y87G2A.4 protein.
Length = 215
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 585 IRLQLWDIAGXERFGNMTRVYYK 653
+ LQLWD AG ERF ++T +++
Sbjct: 65 VLLQLWDTAGQERFRSLTTAFFR 87
>AB112930-1|BAD07035.1| 215|Caenorhabditis elegans Rab27 protein.
Length = 215
Score = 31.5 bits (68), Expect = 0.83
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 585 IRLQLWDIAGXERFGNMTRVYYK 653
+ LQLWD AG ERF ++T +++
Sbjct: 65 VLLQLWDTAGQERFRSLTTAFFR 87
>Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical
protein F11A5.4 protein.
Length = 203
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 540 VDFALKVLNWDSNTIIRLQLWDIAGXERFGNMTRVYYK 653
++F + L D + +L +WD G ERF ++ YY+
Sbjct: 41 IEFGFRNLEIDRKKV-KLHVWDTCGQERFRSLVGSYYR 77
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 585 IRLQLWDIAGXERFGNMTRVYY 650
IR +WD AG E+FG + YY
Sbjct: 58 IRFNVWDTAGQEKFGGLRDGYY 79
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 29.9 bits (64), Expect = 2.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 585 IRLQLWDIAGXERFGNMTRVYYK 653
I+ ++WD AG ER+ ++ +YY+
Sbjct: 68 IKFEIWDTAGQERYHSLAPMYYR 90
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 576 NTIIRLQLWDIAGXERFGNMTRVYY 650
N ++R+QLWD AG ER+ +Y
Sbjct: 146 NELLRVQLWDTAGQERYRQSIVAHY 170
>Z35663-2|CAA84735.2| 335|Caenorhabditis elegans Hypothetical
protein T04A8.2 protein.
Length = 335
Score = 28.7 bits (61), Expect = 5.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 278 SRKFYLILHRNCLIGFIFVFLDVVSK 355
S F+LI +C + F +FLD++ +
Sbjct: 63 SSSFFLIYSTDCFVSFSMIFLDIIGR 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,288
Number of Sequences: 27780
Number of extensions: 302829
Number of successful extensions: 734
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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