Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C23
         (989 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    72   1e-13
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    58   2e-09
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    52   9e-08
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    35   0.020
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   5.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   9.4  

>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 36/90 (40%), Positives = 60/90 (66%)
 Frame = +1

Query: 121 RKLLNVILEATGLDVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSR 300
           R+   +ILE   +D  SYR+G +K+FF+AGVL ++EE R   L ++++ LQ  IRG+L R
Sbjct: 716 RRASVMILEELKIDEASYRIGVSKIFFKAGVLAELEERRVATLQRLMTMLQTRIRGFLQR 775

Query: 301 KEYKKLQEQRLALQVVQRNLRK*LQXRTWP 390
           K ++K  +   A++++Q NL+   + RT+P
Sbjct: 776 KIFQKRLKDIQAIKLLQANLQVYNEFRTFP 805


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
 Frame = +1

Query: 121  RKLLNVILEATGLDVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSR 300
            +K    I+    L    YRLG TKVFF+A VLG +E+ R+  L  I +   A IRG+L+R
Sbjct: 728  KKATITIINELKLPSTVYRLGETKVFFKASVLGSLEDRRNALLRVIFNSFSARIRGFLTR 787

Query: 301  KEYKKLQEQRLALQVVQRNLR--K*LQXRTW 387
            +   +   ++ A  ++Q NLR  K L+   W
Sbjct: 788  RRLYRFNHRQDAAILLQHNLRQLKLLKPHPW 818


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 52.4 bits (120), Expect = 9e-08
 Identities = 26/73 (35%), Positives = 43/73 (58%)
 Frame = +1

Query: 130 LNVILEATGLDVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSRKEY 309
           LN++      D  ++++G +K+FFR+ V+G  EE      SK    LQ+ IRG+ +RKEY
Sbjct: 713 LNIVNSVIPHDNLNFQVGRSKIFFRSNVIGNFEEAHRATCSKSTVLLQSAIRGFFTRKEY 772

Query: 310 KKLQEQRLALQVV 348
           ++  +  + LQ V
Sbjct: 773 QRTVKFIIKLQSV 785



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 241 DRLSKIVSWLQAYIRGYLSRKEYKKLQEQRLALQ-VVQRNL 360
           +++ +    +QA+ R Y+ RK Y  L +  + +Q +V++N+
Sbjct: 798 EKIERAAILIQAHWRSYIQRKRYLSLIKCAIVIQSIVRKNI 838


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 34.7 bits (76), Expect = 0.020
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
 Frame = +1

Query: 160 DVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWL-QAYIRGY------LSRKEYKKL 318
           D   Y++G TK+FFR+GV   +E  RD  L      L +A+   Y      LSRK  +  
Sbjct: 740 DPTKYQIGKTKIFFRSGVTPLLESARDKALKHAAHLLYEAFAVNYYRTRFLLSRKRVRSF 799

Query: 319 Q 321
           Q
Sbjct: 800 Q 800


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +1

Query: 193 VFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSRKEYK 312
           V  R  ++  ++ L +   S ++  LQA IRGY+SR  Y+
Sbjct: 343 VLVRLRLVDMLQSLVEQSSSVVL--LQAVIRGYISRNTYR 380



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 241 DRLSKIVSWLQAYIRGYLSRKEYKKLQEQRLALQVVQ 351
           D L   V+ +Q+  R YL R +Y+K+  Q  A + +Q
Sbjct: 387 DELVNWVTSIQSISRAYLIRAQYRKVVLQEEATKSIQ 423



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 229 ELRDDRLSKIVSWLQAYIRGYLSRKEY-KKLQ 321
           E++ D     +  LQ+ IRGYLSR ++ +KLQ
Sbjct: 649 EVQLDSFIPEIVLLQSLIRGYLSRNKFSRKLQ 680


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 175  RLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYI 282
            +LG T+V  R G+     +   D +SKIV+W+ +YI
Sbjct: 1817 QLGGTQVMHRNGISHLTSQDDFDGISKIVNWI-SYI 1851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,862
Number of Sequences: 5004
Number of extensions: 41198
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)