BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP01_F_C23 (989 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 72 1e-13 SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 58 2e-09 SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 52 9e-08 SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 35 0.020 SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 5.4 SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 9.4 >SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces pombe|chr 3|||Manual Length = 1526 Score = 72.1 bits (169), Expect = 1e-13 Identities = 36/90 (40%), Positives = 60/90 (66%) Frame = +1 Query: 121 RKLLNVILEATGLDVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSR 300 R+ +ILE +D SYR+G +K+FF+AGVL ++EE R L ++++ LQ IRG+L R Sbjct: 716 RRASVMILEELKIDEASYRIGVSKIFFKAGVLAELEERRVATLQRLMTMLQTRIRGFLQR 775 Query: 301 KEYKKLQEQRLALQVVQRNLRK*LQXRTWP 390 K ++K + A++++Q NL+ + RT+P Sbjct: 776 KIFQKRLKDIQAIKLLQANLQVYNEFRTFP 805 >SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces pombe|chr 1|||Manual Length = 2104 Score = 58.0 bits (134), Expect = 2e-09 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 2/91 (2%) Frame = +1 Query: 121 RKLLNVILEATGLDVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSR 300 +K I+ L YRLG TKVFF+A VLG +E+ R+ L I + A IRG+L+R Sbjct: 728 KKATITIINELKLPSTVYRLGETKVFFKASVLGSLEDRRNALLRVIFNSFSARIRGFLTR 787 Query: 301 KEYKKLQEQRLALQVVQRNLR--K*LQXRTW 387 + + ++ A ++Q NLR K L+ W Sbjct: 788 RRLYRFNHRQDAAILLQHNLRQLKLLKPHPW 818 >SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr 2|||Manual Length = 1471 Score = 52.4 bits (120), Expect = 9e-08 Identities = 26/73 (35%), Positives = 43/73 (58%) Frame = +1 Query: 130 LNVILEATGLDVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSRKEY 309 LN++ D ++++G +K+FFR+ V+G EE SK LQ+ IRG+ +RKEY Sbjct: 713 LNIVNSVIPHDNLNFQVGRSKIFFRSNVIGNFEEAHRATCSKSTVLLQSAIRGFFTRKEY 772 Query: 310 KKLQEQRLALQVV 348 ++ + + LQ V Sbjct: 773 QRTVKFIIKLQSV 785 Score = 26.6 bits (56), Expect = 5.4 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Frame = +1 Query: 241 DRLSKIVSWLQAYIRGYLSRKEYKKLQEQRLALQ-VVQRNL 360 +++ + +QA+ R Y+ RK Y L + + +Q +V++N+ Sbjct: 798 EKIERAAILIQAHWRSYIQRKRYLSLIKCAIVIQSIVRKNI 838 >SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr 3|||Manual Length = 1516 Score = 34.7 bits (76), Expect = 0.020 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%) Frame = +1 Query: 160 DVESYRLGHTKVFFRAGVLGQMEELRDDRLSKIVSWL-QAYIRGY------LSRKEYKKL 318 D Y++G TK+FFR+GV +E RD L L +A+ Y LSRK + Sbjct: 740 DPTKYQIGKTKIFFRSGVTPLLESARDKALKHAAHLLYEAFAVNYYRTRFLLSRKRVRSF 799 Query: 319 Q 321 Q Sbjct: 800 Q 800 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 26.6 bits (56), Expect = 5.4 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +1 Query: 193 VFFRAGVLGQMEELRDDRLSKIVSWLQAYIRGYLSRKEYK 312 V R ++ ++ L + S ++ LQA IRGY+SR Y+ Sbjct: 343 VLVRLRLVDMLQSLVEQSSSVVL--LQAVIRGYISRNTYR 380 Score = 25.8 bits (54), Expect = 9.4 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +1 Query: 241 DRLSKIVSWLQAYIRGYLSRKEYKKLQEQRLALQVVQ 351 D L V+ +Q+ R YL R +Y+K+ Q A + +Q Sbjct: 387 DELVNWVTSIQSISRAYLIRAQYRKVVLQEEATKSIQ 423 Score = 25.8 bits (54), Expect = 9.4 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%) Frame = +1 Query: 229 ELRDDRLSKIVSWLQAYIRGYLSRKEY-KKLQ 321 E++ D + LQ+ IRGYLSR ++ +KLQ Sbjct: 649 EVQLDSFIPEIVLLQSLIRGYLSRNKFSRKLQ 680 >SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces pombe|chr 1|||Manual Length = 2280 Score = 25.8 bits (54), Expect = 9.4 Identities = 14/36 (38%), Positives = 22/36 (61%) Frame = +1 Query: 175 RLGHTKVFFRAGVLGQMEELRDDRLSKIVSWLQAYI 282 +LG T+V R G+ + D +SKIV+W+ +YI Sbjct: 1817 QLGGTQVMHRNGISHLTSQDDFDGISKIVNWI-SYI 1851 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,631,862 Number of Sequences: 5004 Number of extensions: 41198 Number of successful extensions: 128 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 128 length of database: 2,362,478 effective HSP length: 73 effective length of database: 1,997,186 effective search space used: 511279616 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -