Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_C22
         (1038 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.12 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.64 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.12
 Identities = 14/40 (35%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
 Frame = +2

Query: 869 PXPPPXPPXPP--PXSXXVXTXXXXPPPXXPPXPPPXSPP 982
           P P P P   P  P           PPP  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.84
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 941  PPXXPPXPPPXSPPXPXXXPXXXXXPPPPPN 1033
            P   P  P   SPP P   P     P  PP+
Sbjct: 27   PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.64
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 939 PPPPXPPPPP 968
           PP P PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 875 PPPXPPXPPPXS 910
           P P PP PPP S
Sbjct: 339 PKPAPPPPPPSS 350



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 822 SXXPPXPXXPPXXPSXPXP 878
           S  PP P  PP  PS   P
Sbjct: 335 SDTPPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 941 PPXXPPXPPPXSPPXP 988
           PP   P PPP S   P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 938 PPPXXPPXPPPXSPP 982
           P P  PP PP  S P
Sbjct: 339 PKPAPPPPPPSSSGP 353


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related protein
            STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -3

Query: 1036 GVGGGGGXXXXXGGXAXXXGXXXGGGGGXGG 944
            G    GG      G +   G   GGGGG  G
Sbjct: 23   GSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 939  PPPPXPPP 962
            PPPP PPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 942  PPPXPPPP 965
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 945  PPXPPPPP 968
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 173 PSGLTIIKVRSRCSCHHDNITNVL 102
           P G  I +   RC+C  D I  V+
Sbjct: 466 PPGTPIYECNKRCNCDIDCINRVV 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 279,627
Number of Sequences: 438
Number of extensions: 10762
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34463286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)